Strain Fitness in Escherichia coli ECRC62 around BNILDI_15070

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyedP and yodD are separated by 297 nucleotidesyodD and dsrB are separated by 162 nucleotidesdsrB and rcsA are separated by 43 nucleotidesrcsA and fliR are separated by 289 nucleotides BNILDI_15050: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 3,038,370 to 3,039,185 yedP BNILDI_15060: yodD - YodD family peroxide/acid resistance protein, at 3,039,483 to 3,039,710 yodD BNILDI_15065: dsrB - protein DsrB, at 3,039,873 to 3,040,061 dsrB BNILDI_15070: rcsA - transcriptional regulator RcsA, at 3,040,105 to 3,040,728 rcsA BNILDI_15075: fliR - flagellar type III secretion system protein FliR, at 3,041,018 to 3,041,803 fliR Position (kb) 3040 3041Strain fitness (log2 ratio) -2 -1 0 1 2at 3039.115 kb on + strandat 3039.115 kb on + strandat 3039.119 kb on + strandat 3039.119 kb on + strandat 3039.120 kb on - strandat 3039.120 kb on - strandat 3039.319 kb on - strandat 3039.431 kb on + strandat 3039.554 kb on + strand, within yodDat 3039.554 kb on + strand, within yodDat 3039.554 kb on + strand, within yodDat 3039.555 kb on - strand, within yodDat 3039.774 kb on + strandat 3039.774 kb on + strandat 3039.778 kb on + strandat 3039.781 kb on - strandat 3039.893 kb on - strand, within dsrBat 3039.969 kb on + strand, within dsrBat 3040.013 kb on + strand, within dsrBat 3040.060 kb on - strandat 3040.177 kb on - strand, within rcsAat 3040.606 kb on + strand, within rcsAat 3040.687 kb on + strandat 3040.705 kb on + strandat 3040.733 kb on + strandat 3040.774 kb on + strandat 3040.812 kb on - strandat 3041.231 kb on - strand, within fliRat 3041.373 kb on - strand, within fliRat 3041.373 kb on - strand, within fliRat 3041.400 kb on - strand, within fliRat 3041.440 kb on + strand, within fliRat 3041.545 kb on + strand, within fliR

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
3,039,115 + -1.1
3,039,115 + +0.1
3,039,119 + +1.1
3,039,119 + -0.9
3,039,120 - -0.1
3,039,120 - +0.7
3,039,319 - +1.2
3,039,431 + +0.2
3,039,554 + yodD BNILDI_15060 0.31 -0.2
3,039,554 + yodD BNILDI_15060 0.31 -1.3
3,039,554 + yodD BNILDI_15060 0.31 -1.8
3,039,555 - yodD BNILDI_15060 0.32 +0.9
3,039,774 + +0.2
3,039,774 + +0.0
3,039,778 + -1.1
3,039,781 - +0.6
3,039,893 - dsrB BNILDI_15065 0.11 -0.6
3,039,969 + dsrB BNILDI_15065 0.51 +0.2
3,040,013 + dsrB BNILDI_15065 0.74 +0.9
3,040,060 - -1.1
3,040,177 - rcsA BNILDI_15070 0.12 +0.9
3,040,606 + rcsA BNILDI_15070 0.80 +0.8
3,040,687 + -0.2
3,040,705 + +0.5
3,040,733 + -1.0
3,040,774 + +0.7
3,040,812 - -0.6
3,041,231 - fliR BNILDI_15075 0.27 -0.2
3,041,373 - fliR BNILDI_15075 0.45 -0.2
3,041,373 - fliR BNILDI_15075 0.45 +0.8
3,041,400 - fliR BNILDI_15075 0.49 +2.0
3,041,440 + fliR BNILDI_15075 0.54 +1.2
3,041,545 + fliR BNILDI_15075 0.67 +1.1

Or see this region's nucleotide sequence