Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cpsG and wcaJ are separated by 54 nucleotides wcaJ and wzxC are separated by 1 nucleotides
BNILDI_14615: cpsG - colanic acid biosynthesis phosphomannomutase CpsG, at 2,951,766 to 2,953,136
cpsG
BNILDI_14620: wcaJ - undecaprenyl-phosphate glucose phosphotransferase, at 2,953,191 to 2,954,585
wcaJ
BNILDI_14625: wzxC - colanic acid undecaprenyl disphosphate flippase WzxC, at 2,954,587 to 2,956,065
wzxC
Position (kb)
2953
2954
2955 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2952.212 kb on + strand, within cpsG at 2952.212 kb on + strand, within cpsG at 2952.251 kb on + strand, within cpsG at 2952.251 kb on + strand, within cpsG at 2952.251 kb on + strand, within cpsG at 2952.251 kb on + strand, within cpsG at 2952.252 kb on - strand, within cpsG at 2952.555 kb on + strand, within cpsG at 2952.555 kb on + strand, within cpsG at 2952.556 kb on - strand, within cpsG at 2952.558 kb on + strand, within cpsG at 2952.559 kb on - strand, within cpsG at 2952.559 kb on - strand, within cpsG at 2952.559 kb on - strand, within cpsG at 2952.559 kb on - strand, within cpsG at 2952.559 kb on - strand, within cpsG at 2952.708 kb on - strand, within cpsG at 2952.716 kb on + strand, within cpsG at 2952.716 kb on + strand, within cpsG at 2952.717 kb on - strand, within cpsG at 2952.717 kb on - strand, within cpsG at 2952.738 kb on + strand, within cpsG at 2952.738 kb on + strand, within cpsG at 2952.739 kb on - strand, within cpsG at 2952.739 kb on - strand, within cpsG at 2952.765 kb on + strand, within cpsG at 2953.134 kb on + strand at 2953.177 kb on + strand at 2953.245 kb on - strand at 2953.245 kb on - strand at 2953.289 kb on - strand at 2953.326 kb on + strand at 2953.360 kb on + strand, within wcaJ at 2953.459 kb on + strand, within wcaJ at 2953.578 kb on - strand, within wcaJ at 2953.614 kb on + strand, within wcaJ at 2953.616 kb on + strand, within wcaJ at 2953.815 kb on + strand, within wcaJ at 2953.816 kb on - strand, within wcaJ at 2953.914 kb on - strand, within wcaJ at 2954.009 kb on - strand, within wcaJ at 2954.009 kb on - strand, within wcaJ at 2954.043 kb on - strand, within wcaJ at 2954.043 kb on - strand, within wcaJ at 2954.075 kb on + strand, within wcaJ at 2954.383 kb on - strand, within wcaJ at 2954.499 kb on + strand at 2954.500 kb on - strand at 2954.500 kb on - strand at 2954.595 kb on - strand at 2954.719 kb on - strand at 2954.751 kb on + strand, within wzxC at 2954.752 kb on - strand, within wzxC at 2954.752 kb on - strand, within wzxC at 2954.785 kb on - strand, within wzxC at 2954.907 kb on + strand, within wzxC at 2954.931 kb on + strand, within wzxC at 2954.931 kb on + strand, within wzxC at 2955.123 kb on + strand, within wzxC at 2955.123 kb on + strand, within wzxC at 2955.124 kb on - strand, within wzxC at 2955.216 kb on - strand, within wzxC at 2955.216 kb on - strand, within wzxC at 2955.216 kb on - strand, within wzxC at 2955.256 kb on + strand, within wzxC at 2955.256 kb on + strand, within wzxC at 2955.322 kb on + strand, within wzxC at 2955.556 kb on - strand, within wzxC at 2955.556 kb on - strand, within wzxC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,952,212 + cpsG BNILDI_14615 0.33 +1.9 2,952,212 + cpsG BNILDI_14615 0.33 -0.4 2,952,251 + cpsG BNILDI_14615 0.35 -0.1 2,952,251 + cpsG BNILDI_14615 0.35 -0.4 2,952,251 + cpsG BNILDI_14615 0.35 -0.9 2,952,251 + cpsG BNILDI_14615 0.35 +0.5 2,952,252 - cpsG BNILDI_14615 0.35 +0.4 2,952,555 + cpsG BNILDI_14615 0.58 -2.5 2,952,555 + cpsG BNILDI_14615 0.58 -1.6 2,952,556 - cpsG BNILDI_14615 0.58 -1.7 2,952,558 + cpsG BNILDI_14615 0.58 +0.5 2,952,559 - cpsG BNILDI_14615 0.58 +1.4 2,952,559 - cpsG BNILDI_14615 0.58 +0.3 2,952,559 - cpsG BNILDI_14615 0.58 -0.1 2,952,559 - cpsG BNILDI_14615 0.58 -0.3 2,952,559 - cpsG BNILDI_14615 0.58 -1.4 2,952,708 - cpsG BNILDI_14615 0.69 -0.1 2,952,716 + cpsG BNILDI_14615 0.69 +0.5 2,952,716 + cpsG BNILDI_14615 0.69 +0.7 2,952,717 - cpsG BNILDI_14615 0.69 +0.9 2,952,717 - cpsG BNILDI_14615 0.69 +0.8 2,952,738 + cpsG BNILDI_14615 0.71 +0.8 2,952,738 + cpsG BNILDI_14615 0.71 +0.0 2,952,739 - cpsG BNILDI_14615 0.71 -1.1 2,952,739 - cpsG BNILDI_14615 0.71 -1.6 2,952,765 + cpsG BNILDI_14615 0.73 -0.1 2,953,134 + +0.3 2,953,177 + -0.7 2,953,245 - +1.2 2,953,245 - +2.1 2,953,289 - +1.5 2,953,326 + -0.4 2,953,360 + wcaJ BNILDI_14620 0.12 -0.2 2,953,459 + wcaJ BNILDI_14620 0.19 -0.6 2,953,578 - wcaJ BNILDI_14620 0.28 -0.4 2,953,614 + wcaJ BNILDI_14620 0.30 +0.5 2,953,616 + wcaJ BNILDI_14620 0.30 -1.6 2,953,815 + wcaJ BNILDI_14620 0.45 +0.5 2,953,816 - wcaJ BNILDI_14620 0.45 +1.6 2,953,914 - wcaJ BNILDI_14620 0.52 -0.0 2,954,009 - wcaJ BNILDI_14620 0.59 +0.3 2,954,009 - wcaJ BNILDI_14620 0.59 -2.3 2,954,043 - wcaJ BNILDI_14620 0.61 -0.2 2,954,043 - wcaJ BNILDI_14620 0.61 +0.7 2,954,075 + wcaJ BNILDI_14620 0.63 -0.7 2,954,383 - wcaJ BNILDI_14620 0.85 +0.1 2,954,499 + -0.4 2,954,500 - -0.9 2,954,500 - -0.5 2,954,595 - +1.8 2,954,719 - -0.3 2,954,751 + wzxC BNILDI_14625 0.11 +0.3 2,954,752 - wzxC BNILDI_14625 0.11 -0.9 2,954,752 - wzxC BNILDI_14625 0.11 +0.6 2,954,785 - wzxC BNILDI_14625 0.13 -0.0 2,954,907 + wzxC BNILDI_14625 0.22 +0.5 2,954,931 + wzxC BNILDI_14625 0.23 -0.3 2,954,931 + wzxC BNILDI_14625 0.23 -1.4 2,955,123 + wzxC BNILDI_14625 0.36 +0.1 2,955,123 + wzxC BNILDI_14625 0.36 +0.3 2,955,124 - wzxC BNILDI_14625 0.36 +0.1 2,955,216 - wzxC BNILDI_14625 0.43 -0.3 2,955,216 - wzxC BNILDI_14625 0.43 -0.0 2,955,216 - wzxC BNILDI_14625 0.43 -0.3 2,955,256 + wzxC BNILDI_14625 0.45 -0.2 2,955,256 + wzxC BNILDI_14625 0.45 -0.1 2,955,322 + wzxC BNILDI_14625 0.50 +0.9 2,955,556 - wzxC BNILDI_14625 0.66 +0.4 2,955,556 - wzxC BNILDI_14625 0.66 +0.3
Or see this region's nucleotide sequence