Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfaQ and yfaP are separated by 4 nucleotides yfaP and rcsC are separated by 274 nucleotides
BNILDI_13655: yfaQ - Uncharacterized protein YfaQ, at 2,746,680 to 2,748,329
yfaQ
BNILDI_13660: yfaP - Uncharacterized protein YfaP, at 2,748,334 to 2,749,110
yfaP
BNILDI_13665: rcsC - two-component system sensor histidine kinase RcsC, at 2,749,385 to 2,752,234
rcsC
Position (kb)
2748
2749
2750 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2747.381 kb on - strand, within yfaQ at 2747.449 kb on + strand, within yfaQ at 2747.505 kb on - strand, within yfaQ at 2747.515 kb on + strand, within yfaQ at 2747.516 kb on - strand, within yfaQ at 2747.527 kb on + strand, within yfaQ at 2747.531 kb on + strand, within yfaQ at 2747.555 kb on + strand, within yfaQ at 2747.556 kb on - strand, within yfaQ at 2747.574 kb on - strand, within yfaQ at 2747.574 kb on - strand, within yfaQ at 2747.603 kb on - strand, within yfaQ at 2747.691 kb on - strand, within yfaQ at 2747.868 kb on + strand, within yfaQ at 2747.868 kb on + strand, within yfaQ at 2747.868 kb on + strand, within yfaQ at 2747.868 kb on + strand, within yfaQ at 2747.889 kb on + strand, within yfaQ at 2747.974 kb on + strand, within yfaQ at 2748.040 kb on + strand, within yfaQ at 2748.092 kb on + strand, within yfaQ at 2748.094 kb on + strand, within yfaQ at 2748.095 kb on - strand, within yfaQ at 2748.097 kb on + strand, within yfaQ at 2748.098 kb on - strand, within yfaQ at 2748.098 kb on - strand, within yfaQ at 2748.098 kb on - strand, within yfaQ at 2748.098 kb on - strand, within yfaQ at 2748.098 kb on - strand, within yfaQ at 2748.165 kb on + strand at 2748.200 kb on + strand at 2748.243 kb on + strand at 2748.244 kb on - strand at 2748.292 kb on - strand at 2748.292 kb on - strand at 2748.317 kb on - strand at 2748.317 kb on - strand at 2748.328 kb on - strand at 2748.328 kb on - strand at 2748.554 kb on - strand, within yfaP at 2748.554 kb on - strand, within yfaP at 2748.606 kb on + strand, within yfaP at 2748.652 kb on - strand, within yfaP at 2748.724 kb on + strand, within yfaP at 2748.725 kb on - strand, within yfaP at 2748.793 kb on - strand, within yfaP at 2748.793 kb on - strand, within yfaP at 2748.880 kb on - strand, within yfaP at 2748.952 kb on + strand, within yfaP at 2748.952 kb on + strand, within yfaP at 2748.953 kb on - strand, within yfaP at 2748.955 kb on - strand, within yfaP at 2748.961 kb on + strand, within yfaP at 2748.962 kb on - strand, within yfaP at 2748.962 kb on - strand, within yfaP at 2748.962 kb on - strand, within yfaP at 2748.962 kb on - strand, within yfaP at 2748.964 kb on + strand, within yfaP at 2748.965 kb on - strand, within yfaP at 2748.965 kb on - strand, within yfaP at 2748.965 kb on - strand, within yfaP at 2749.053 kb on + strand at 2749.053 kb on + strand at 2749.054 kb on - strand at 2749.059 kb on - strand at 2749.130 kb on + strand at 2749.130 kb on + strand at 2749.130 kb on + strand at 2749.131 kb on - strand at 2749.150 kb on + strand at 2749.182 kb on + strand at 2749.184 kb on + strand at 2749.185 kb on - strand at 2749.248 kb on - strand at 2749.248 kb on - strand at 2749.294 kb on + strand at 2749.431 kb on - strand at 2749.431 kb on - strand at 2749.506 kb on + strand at 2749.507 kb on - strand at 2749.507 kb on - strand at 2749.507 kb on - strand at 2749.571 kb on - strand at 2749.607 kb on + strand at 2749.608 kb on - strand at 2749.608 kb on - strand at 2749.769 kb on - strand, within rcsC at 2749.802 kb on + strand, within rcsC at 2749.809 kb on + strand, within rcsC at 2749.809 kb on + strand, within rcsC at 2749.921 kb on + strand, within rcsC at 2749.921 kb on + strand, within rcsC at 2749.922 kb on - strand, within rcsC at 2749.958 kb on - strand, within rcsC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,747,381 - yfaQ BNILDI_13655 0.42 -0.1 2,747,449 + yfaQ BNILDI_13655 0.47 -0.0 2,747,505 - yfaQ BNILDI_13655 0.50 +0.3 2,747,515 + yfaQ BNILDI_13655 0.51 +0.1 2,747,516 - yfaQ BNILDI_13655 0.51 +0.6 2,747,527 + yfaQ BNILDI_13655 0.51 -0.6 2,747,531 + yfaQ BNILDI_13655 0.52 +0.3 2,747,555 + yfaQ BNILDI_13655 0.53 -0.5 2,747,556 - yfaQ BNILDI_13655 0.53 -0.6 2,747,574 - yfaQ BNILDI_13655 0.54 +0.6 2,747,574 - yfaQ BNILDI_13655 0.54 -0.0 2,747,603 - yfaQ BNILDI_13655 0.56 +0.9 2,747,691 - yfaQ BNILDI_13655 0.61 -0.0 2,747,868 + yfaQ BNILDI_13655 0.72 -0.1 2,747,868 + yfaQ BNILDI_13655 0.72 -0.4 2,747,868 + yfaQ BNILDI_13655 0.72 -1.4 2,747,868 + yfaQ BNILDI_13655 0.72 +0.0 2,747,889 + yfaQ BNILDI_13655 0.73 -0.2 2,747,974 + yfaQ BNILDI_13655 0.78 -1.1 2,748,040 + yfaQ BNILDI_13655 0.82 +0.1 2,748,092 + yfaQ BNILDI_13655 0.86 +0.2 2,748,094 + yfaQ BNILDI_13655 0.86 +0.2 2,748,095 - yfaQ BNILDI_13655 0.86 +1.3 2,748,097 + yfaQ BNILDI_13655 0.86 +1.2 2,748,098 - yfaQ BNILDI_13655 0.86 -0.5 2,748,098 - yfaQ BNILDI_13655 0.86 -0.5 2,748,098 - yfaQ BNILDI_13655 0.86 +0.0 2,748,098 - yfaQ BNILDI_13655 0.86 +0.0 2,748,098 - yfaQ BNILDI_13655 0.86 -0.8 2,748,165 + +1.4 2,748,200 + +0.8 2,748,243 + +1.6 2,748,244 - -0.4 2,748,292 - +0.0 2,748,292 - +2.1 2,748,317 - -0.5 2,748,317 - -0.2 2,748,328 - +0.2 2,748,328 - -0.5 2,748,554 - yfaP BNILDI_13660 0.28 -0.3 2,748,554 - yfaP BNILDI_13660 0.28 +0.8 2,748,606 + yfaP BNILDI_13660 0.35 -0.4 2,748,652 - yfaP BNILDI_13660 0.41 -0.4 2,748,724 + yfaP BNILDI_13660 0.50 -0.0 2,748,725 - yfaP BNILDI_13660 0.50 -2.0 2,748,793 - yfaP BNILDI_13660 0.59 -0.3 2,748,793 - yfaP BNILDI_13660 0.59 +0.3 2,748,880 - yfaP BNILDI_13660 0.70 -0.6 2,748,952 + yfaP BNILDI_13660 0.80 -0.3 2,748,952 + yfaP BNILDI_13660 0.80 +1.4 2,748,953 - yfaP BNILDI_13660 0.80 -0.2 2,748,955 - yfaP BNILDI_13660 0.80 -0.6 2,748,961 + yfaP BNILDI_13660 0.81 -1.0 2,748,962 - yfaP BNILDI_13660 0.81 -0.0 2,748,962 - yfaP BNILDI_13660 0.81 -0.8 2,748,962 - yfaP BNILDI_13660 0.81 -0.1 2,748,962 - yfaP BNILDI_13660 0.81 +0.2 2,748,964 + yfaP BNILDI_13660 0.81 -0.3 2,748,965 - yfaP BNILDI_13660 0.81 -0.6 2,748,965 - yfaP BNILDI_13660 0.81 +0.6 2,748,965 - yfaP BNILDI_13660 0.81 -0.4 2,749,053 + +0.4 2,749,053 + -0.1 2,749,054 - +0.1 2,749,059 - -0.4 2,749,130 + +0.1 2,749,130 + -0.5 2,749,130 + -0.6 2,749,131 - +0.1 2,749,150 + +0.8 2,749,182 + -1.1 2,749,184 + +0.5 2,749,185 - +0.6 2,749,248 - +0.4 2,749,248 - +0.3 2,749,294 + +0.8 2,749,431 - +0.1 2,749,431 - -0.7 2,749,506 + +0.4 2,749,507 - -0.0 2,749,507 - -0.9 2,749,507 - -0.2 2,749,571 - +1.0 2,749,607 + +0.5 2,749,608 - -0.0 2,749,608 - +0.1 2,749,769 - rcsC BNILDI_13665 0.13 +0.0 2,749,802 + rcsC BNILDI_13665 0.15 +0.1 2,749,809 + rcsC BNILDI_13665 0.15 -1.0 2,749,809 + rcsC BNILDI_13665 0.15 -0.7 2,749,921 + rcsC BNILDI_13665 0.19 +0.8 2,749,921 + rcsC BNILDI_13665 0.19 +0.6 2,749,922 - rcsC BNILDI_13665 0.19 +0.8 2,749,958 - rcsC BNILDI_13665 0.20 -1.2
Or see this region's nucleotide sequence