Strain Fitness in Escherichia coli ECRC62 around BNILDI_13660

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfaQ and yfaP are separated by 4 nucleotidesyfaP and rcsC are separated by 274 nucleotides BNILDI_13655: yfaQ - Uncharacterized protein YfaQ, at 2,746,680 to 2,748,329 yfaQ BNILDI_13660: yfaP - Uncharacterized protein YfaP, at 2,748,334 to 2,749,110 yfaP BNILDI_13665: rcsC - two-component system sensor histidine kinase RcsC, at 2,749,385 to 2,752,234 rcsC Position (kb) 2748 2749 2750Strain fitness (log2 ratio) -2 -1 0 1 2at 2747.381 kb on - strand, within yfaQat 2747.449 kb on + strand, within yfaQat 2747.505 kb on - strand, within yfaQat 2747.515 kb on + strand, within yfaQat 2747.516 kb on - strand, within yfaQat 2747.527 kb on + strand, within yfaQat 2747.531 kb on + strand, within yfaQat 2747.555 kb on + strand, within yfaQat 2747.556 kb on - strand, within yfaQat 2747.574 kb on - strand, within yfaQat 2747.574 kb on - strand, within yfaQat 2747.603 kb on - strand, within yfaQat 2747.691 kb on - strand, within yfaQat 2747.868 kb on + strand, within yfaQat 2747.868 kb on + strand, within yfaQat 2747.868 kb on + strand, within yfaQat 2747.868 kb on + strand, within yfaQat 2747.889 kb on + strand, within yfaQat 2747.974 kb on + strand, within yfaQat 2748.040 kb on + strand, within yfaQat 2748.092 kb on + strand, within yfaQat 2748.094 kb on + strand, within yfaQat 2748.095 kb on - strand, within yfaQat 2748.097 kb on + strand, within yfaQat 2748.098 kb on - strand, within yfaQat 2748.098 kb on - strand, within yfaQat 2748.098 kb on - strand, within yfaQat 2748.098 kb on - strand, within yfaQat 2748.098 kb on - strand, within yfaQat 2748.165 kb on + strandat 2748.200 kb on + strandat 2748.243 kb on + strandat 2748.244 kb on - strandat 2748.292 kb on - strandat 2748.292 kb on - strandat 2748.317 kb on - strandat 2748.317 kb on - strandat 2748.328 kb on - strandat 2748.328 kb on - strandat 2748.554 kb on - strand, within yfaPat 2748.554 kb on - strand, within yfaPat 2748.606 kb on + strand, within yfaPat 2748.652 kb on - strand, within yfaPat 2748.724 kb on + strand, within yfaPat 2748.725 kb on - strand, within yfaPat 2748.793 kb on - strand, within yfaPat 2748.793 kb on - strand, within yfaPat 2748.880 kb on - strand, within yfaPat 2748.952 kb on + strand, within yfaPat 2748.952 kb on + strand, within yfaPat 2748.953 kb on - strand, within yfaPat 2748.955 kb on - strand, within yfaPat 2748.961 kb on + strand, within yfaPat 2748.962 kb on - strand, within yfaPat 2748.962 kb on - strand, within yfaPat 2748.962 kb on - strand, within yfaPat 2748.962 kb on - strand, within yfaPat 2748.964 kb on + strand, within yfaPat 2748.965 kb on - strand, within yfaPat 2748.965 kb on - strand, within yfaPat 2748.965 kb on - strand, within yfaPat 2749.053 kb on + strandat 2749.053 kb on + strandat 2749.054 kb on - strandat 2749.059 kb on - strandat 2749.130 kb on + strandat 2749.130 kb on + strandat 2749.130 kb on + strandat 2749.131 kb on - strandat 2749.150 kb on + strandat 2749.182 kb on + strandat 2749.184 kb on + strandat 2749.185 kb on - strandat 2749.248 kb on - strandat 2749.248 kb on - strandat 2749.294 kb on + strandat 2749.431 kb on - strandat 2749.431 kb on - strandat 2749.506 kb on + strandat 2749.507 kb on - strandat 2749.507 kb on - strandat 2749.507 kb on - strandat 2749.571 kb on - strandat 2749.607 kb on + strandat 2749.608 kb on - strandat 2749.608 kb on - strandat 2749.769 kb on - strand, within rcsCat 2749.802 kb on + strand, within rcsCat 2749.809 kb on + strand, within rcsCat 2749.809 kb on + strand, within rcsCat 2749.921 kb on + strand, within rcsCat 2749.921 kb on + strand, within rcsCat 2749.922 kb on - strand, within rcsCat 2749.958 kb on - strand, within rcsC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,747,381 - yfaQ BNILDI_13655 0.42 -0.1
2,747,449 + yfaQ BNILDI_13655 0.47 -0.0
2,747,505 - yfaQ BNILDI_13655 0.50 +0.3
2,747,515 + yfaQ BNILDI_13655 0.51 +0.1
2,747,516 - yfaQ BNILDI_13655 0.51 +0.6
2,747,527 + yfaQ BNILDI_13655 0.51 -0.6
2,747,531 + yfaQ BNILDI_13655 0.52 +0.3
2,747,555 + yfaQ BNILDI_13655 0.53 -0.5
2,747,556 - yfaQ BNILDI_13655 0.53 -0.6
2,747,574 - yfaQ BNILDI_13655 0.54 +0.6
2,747,574 - yfaQ BNILDI_13655 0.54 -0.0
2,747,603 - yfaQ BNILDI_13655 0.56 +0.9
2,747,691 - yfaQ BNILDI_13655 0.61 -0.0
2,747,868 + yfaQ BNILDI_13655 0.72 -0.1
2,747,868 + yfaQ BNILDI_13655 0.72 -0.4
2,747,868 + yfaQ BNILDI_13655 0.72 -1.4
2,747,868 + yfaQ BNILDI_13655 0.72 +0.0
2,747,889 + yfaQ BNILDI_13655 0.73 -0.2
2,747,974 + yfaQ BNILDI_13655 0.78 -1.1
2,748,040 + yfaQ BNILDI_13655 0.82 +0.1
2,748,092 + yfaQ BNILDI_13655 0.86 +0.2
2,748,094 + yfaQ BNILDI_13655 0.86 +0.2
2,748,095 - yfaQ BNILDI_13655 0.86 +1.3
2,748,097 + yfaQ BNILDI_13655 0.86 +1.2
2,748,098 - yfaQ BNILDI_13655 0.86 -0.5
2,748,098 - yfaQ BNILDI_13655 0.86 -0.5
2,748,098 - yfaQ BNILDI_13655 0.86 +0.0
2,748,098 - yfaQ BNILDI_13655 0.86 +0.0
2,748,098 - yfaQ BNILDI_13655 0.86 -0.8
2,748,165 + +1.4
2,748,200 + +0.8
2,748,243 + +1.6
2,748,244 - -0.4
2,748,292 - +0.0
2,748,292 - +2.1
2,748,317 - -0.5
2,748,317 - -0.2
2,748,328 - +0.2
2,748,328 - -0.5
2,748,554 - yfaP BNILDI_13660 0.28 -0.3
2,748,554 - yfaP BNILDI_13660 0.28 +0.8
2,748,606 + yfaP BNILDI_13660 0.35 -0.4
2,748,652 - yfaP BNILDI_13660 0.41 -0.4
2,748,724 + yfaP BNILDI_13660 0.50 -0.0
2,748,725 - yfaP BNILDI_13660 0.50 -2.0
2,748,793 - yfaP BNILDI_13660 0.59 -0.3
2,748,793 - yfaP BNILDI_13660 0.59 +0.3
2,748,880 - yfaP BNILDI_13660 0.70 -0.6
2,748,952 + yfaP BNILDI_13660 0.80 -0.3
2,748,952 + yfaP BNILDI_13660 0.80 +1.4
2,748,953 - yfaP BNILDI_13660 0.80 -0.2
2,748,955 - yfaP BNILDI_13660 0.80 -0.6
2,748,961 + yfaP BNILDI_13660 0.81 -1.0
2,748,962 - yfaP BNILDI_13660 0.81 -0.0
2,748,962 - yfaP BNILDI_13660 0.81 -0.8
2,748,962 - yfaP BNILDI_13660 0.81 -0.1
2,748,962 - yfaP BNILDI_13660 0.81 +0.2
2,748,964 + yfaP BNILDI_13660 0.81 -0.3
2,748,965 - yfaP BNILDI_13660 0.81 -0.6
2,748,965 - yfaP BNILDI_13660 0.81 +0.6
2,748,965 - yfaP BNILDI_13660 0.81 -0.4
2,749,053 + +0.4
2,749,053 + -0.1
2,749,054 - +0.1
2,749,059 - -0.4
2,749,130 + +0.1
2,749,130 + -0.5
2,749,130 + -0.6
2,749,131 - +0.1
2,749,150 + +0.8
2,749,182 + -1.1
2,749,184 + +0.5
2,749,185 - +0.6
2,749,248 - +0.4
2,749,248 - +0.3
2,749,294 + +0.8
2,749,431 - +0.1
2,749,431 - -0.7
2,749,506 + +0.4
2,749,507 - -0.0
2,749,507 - -0.9
2,749,507 - -0.2
2,749,571 - +1.0
2,749,607 + +0.5
2,749,608 - -0.0
2,749,608 - +0.1
2,749,769 - rcsC BNILDI_13665 0.13 +0.0
2,749,802 + rcsC BNILDI_13665 0.15 +0.1
2,749,809 + rcsC BNILDI_13665 0.15 -1.0
2,749,809 + rcsC BNILDI_13665 0.15 -0.7
2,749,921 + rcsC BNILDI_13665 0.19 +0.8
2,749,921 + rcsC BNILDI_13665 0.19 +0.6
2,749,922 - rcsC BNILDI_13665 0.19 +0.8
2,749,958 - rcsC BNILDI_13665 0.20 -1.2

Or see this region's nucleotide sequence