Strain Fitness in Escherichia coli ECRC62 around BNILDI_13640

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgyrA and yfaA are separated by 148 nucleotidesyfaA and yfaT overlap by 4 nucleotidesyfaT and yfaS are separated by 143 nucleotides BNILDI_13635: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 2,737,057 to 2,739,684 gyrA BNILDI_13640: yfaA - DUF2138 domain-containing protein, at 2,739,833 to 2,741,521 yfaA BNILDI_13645: yfaT - DUF1175 domain-containing protein, at 2,741,518 to 2,742,141 yfaT BNILDI_13650: yfaS - Putative alpha-2-macroglobulin-like protein, at 2,742,285 to 2,746,679 yfaS Position (kb) 2739 2740 2741 2742Strain fitness (log2 ratio) -2 -1 0 1 2at 2739.712 kb on + strandat 2739.712 kb on + strandat 2739.769 kb on + strandat 2739.814 kb on - strandat 2739.816 kb on - strandat 2739.869 kb on + strandat 2739.869 kb on + strandat 2739.930 kb on - strandat 2740.103 kb on + strand, within yfaAat 2740.186 kb on + strand, within yfaAat 2740.187 kb on - strand, within yfaAat 2740.207 kb on - strand, within yfaAat 2740.262 kb on + strand, within yfaAat 2740.262 kb on + strand, within yfaAat 2740.262 kb on + strand, within yfaAat 2740.263 kb on - strand, within yfaAat 2740.263 kb on - strand, within yfaAat 2740.264 kb on + strand, within yfaAat 2740.264 kb on + strand, within yfaAat 2740.264 kb on + strand, within yfaAat 2740.265 kb on - strand, within yfaAat 2740.372 kb on - strand, within yfaAat 2740.375 kb on + strand, within yfaAat 2740.375 kb on + strand, within yfaAat 2740.384 kb on + strand, within yfaAat 2740.406 kb on + strand, within yfaAat 2740.408 kb on + strand, within yfaAat 2740.474 kb on + strand, within yfaAat 2740.474 kb on + strand, within yfaAat 2740.475 kb on - strand, within yfaAat 2740.484 kb on - strand, within yfaAat 2740.654 kb on - strand, within yfaAat 2740.705 kb on + strand, within yfaAat 2740.777 kb on + strand, within yfaAat 2740.777 kb on + strand, within yfaAat 2740.778 kb on - strand, within yfaAat 2741.005 kb on + strand, within yfaAat 2741.149 kb on - strand, within yfaAat 2741.277 kb on + strand, within yfaAat 2741.278 kb on - strand, within yfaAat 2741.278 kb on - strand, within yfaAat 2741.278 kb on - strand, within yfaAat 2741.278 kb on - strand, within yfaAat 2741.306 kb on + strand, within yfaAat 2741.309 kb on - strand, within yfaAat 2741.407 kb on - strandat 2741.407 kb on - strandat 2741.621 kb on + strand, within yfaTat 2741.669 kb on - strand, within yfaTat 2741.852 kb on - strand, within yfaTat 2741.907 kb on - strand, within yfaTat 2741.963 kb on + strand, within yfaTat 2741.964 kb on - strand, within yfaTat 2741.992 kb on + strand, within yfaTat 2741.992 kb on + strand, within yfaTat 2741.992 kb on + strand, within yfaTat 2741.993 kb on - strand, within yfaTat 2742.055 kb on - strand, within yfaTat 2742.115 kb on + strandat 2742.213 kb on + strandat 2742.365 kb on + strandat 2742.366 kb on - strandat 2742.366 kb on - strandat 2742.456 kb on - strandat 2742.483 kb on + strandat 2742.512 kb on + strandat 2742.513 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,739,712 + +0.5
2,739,712 + +0.1
2,739,769 + +0.0
2,739,814 - -0.5
2,739,816 - +0.1
2,739,869 + -0.1
2,739,869 + -0.3
2,739,930 - -0.8
2,740,103 + yfaA BNILDI_13640 0.16 -0.1
2,740,186 + yfaA BNILDI_13640 0.21 -0.1
2,740,187 - yfaA BNILDI_13640 0.21 +0.9
2,740,207 - yfaA BNILDI_13640 0.22 -0.7
2,740,262 + yfaA BNILDI_13640 0.25 -0.6
2,740,262 + yfaA BNILDI_13640 0.25 +0.2
2,740,262 + yfaA BNILDI_13640 0.25 +1.1
2,740,263 - yfaA BNILDI_13640 0.25 +0.1
2,740,263 - yfaA BNILDI_13640 0.25 +1.5
2,740,264 + yfaA BNILDI_13640 0.26 +0.5
2,740,264 + yfaA BNILDI_13640 0.26 +0.5
2,740,264 + yfaA BNILDI_13640 0.26 -0.1
2,740,265 - yfaA BNILDI_13640 0.26 +0.8
2,740,372 - yfaA BNILDI_13640 0.32 +1.9
2,740,375 + yfaA BNILDI_13640 0.32 -1.9
2,740,375 + yfaA BNILDI_13640 0.32 +0.2
2,740,384 + yfaA BNILDI_13640 0.33 -0.1
2,740,406 + yfaA BNILDI_13640 0.34 -0.0
2,740,408 + yfaA BNILDI_13640 0.34 -0.9
2,740,474 + yfaA BNILDI_13640 0.38 -0.3
2,740,474 + yfaA BNILDI_13640 0.38 +0.0
2,740,475 - yfaA BNILDI_13640 0.38 -0.1
2,740,484 - yfaA BNILDI_13640 0.39 +0.0
2,740,654 - yfaA BNILDI_13640 0.49 -0.4
2,740,705 + yfaA BNILDI_13640 0.52 -0.2
2,740,777 + yfaA BNILDI_13640 0.56 -0.5
2,740,777 + yfaA BNILDI_13640 0.56 -2.0
2,740,778 - yfaA BNILDI_13640 0.56 +0.1
2,741,005 + yfaA BNILDI_13640 0.69 +0.7
2,741,149 - yfaA BNILDI_13640 0.78 +0.2
2,741,277 + yfaA BNILDI_13640 0.85 +0.3
2,741,278 - yfaA BNILDI_13640 0.86 +0.6
2,741,278 - yfaA BNILDI_13640 0.86 +0.5
2,741,278 - yfaA BNILDI_13640 0.86 +0.1
2,741,278 - yfaA BNILDI_13640 0.86 -0.9
2,741,306 + yfaA BNILDI_13640 0.87 +0.9
2,741,309 - yfaA BNILDI_13640 0.87 +0.8
2,741,407 - +0.1
2,741,407 - +0.1
2,741,621 + yfaT BNILDI_13645 0.17 +0.1
2,741,669 - yfaT BNILDI_13645 0.24 +0.8
2,741,852 - yfaT BNILDI_13645 0.54 -0.5
2,741,907 - yfaT BNILDI_13645 0.62 -0.3
2,741,963 + yfaT BNILDI_13645 0.71 +0.8
2,741,964 - yfaT BNILDI_13645 0.71 +0.6
2,741,992 + yfaT BNILDI_13645 0.76 -0.8
2,741,992 + yfaT BNILDI_13645 0.76 -2.1
2,741,992 + yfaT BNILDI_13645 0.76 +1.7
2,741,993 - yfaT BNILDI_13645 0.76 -0.0
2,742,055 - yfaT BNILDI_13645 0.86 -0.1
2,742,115 + +0.2
2,742,213 + -0.5
2,742,365 + +0.5
2,742,366 - +0.8
2,742,366 - -0.4
2,742,456 - +1.7
2,742,483 + -2.2
2,742,512 + +0.3
2,742,513 - -0.6

Or see this region's nucleotide sequence