Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gyrA and yfaA are separated by 148 nucleotides yfaA and yfaT overlap by 4 nucleotides yfaT and yfaS are separated by 143 nucleotides
BNILDI_13635: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 2,737,057 to 2,739,684
gyrA
BNILDI_13640: yfaA - DUF2138 domain-containing protein, at 2,739,833 to 2,741,521
yfaA
BNILDI_13645: yfaT - DUF1175 domain-containing protein, at 2,741,518 to 2,742,141
yfaT
BNILDI_13650: yfaS - Putative alpha-2-macroglobulin-like protein, at 2,742,285 to 2,746,679
yfaS
Position (kb)
2739
2740
2741
2742 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2739.712 kb on + strand at 2739.712 kb on + strand at 2739.769 kb on + strand at 2739.814 kb on - strand at 2739.816 kb on - strand at 2739.869 kb on + strand at 2739.869 kb on + strand at 2739.930 kb on - strand at 2740.103 kb on + strand, within yfaA at 2740.186 kb on + strand, within yfaA at 2740.187 kb on - strand, within yfaA at 2740.207 kb on - strand, within yfaA at 2740.262 kb on + strand, within yfaA at 2740.262 kb on + strand, within yfaA at 2740.262 kb on + strand, within yfaA at 2740.263 kb on - strand, within yfaA at 2740.263 kb on - strand, within yfaA at 2740.264 kb on + strand, within yfaA at 2740.264 kb on + strand, within yfaA at 2740.264 kb on + strand, within yfaA at 2740.265 kb on - strand, within yfaA at 2740.372 kb on - strand, within yfaA at 2740.375 kb on + strand, within yfaA at 2740.375 kb on + strand, within yfaA at 2740.384 kb on + strand, within yfaA at 2740.406 kb on + strand, within yfaA at 2740.408 kb on + strand, within yfaA at 2740.474 kb on + strand, within yfaA at 2740.474 kb on + strand, within yfaA at 2740.475 kb on - strand, within yfaA at 2740.484 kb on - strand, within yfaA at 2740.654 kb on - strand, within yfaA at 2740.705 kb on + strand, within yfaA at 2740.777 kb on + strand, within yfaA at 2740.777 kb on + strand, within yfaA at 2740.778 kb on - strand, within yfaA at 2741.005 kb on + strand, within yfaA at 2741.149 kb on - strand, within yfaA at 2741.277 kb on + strand, within yfaA at 2741.278 kb on - strand, within yfaA at 2741.278 kb on - strand, within yfaA at 2741.278 kb on - strand, within yfaA at 2741.278 kb on - strand, within yfaA at 2741.306 kb on + strand, within yfaA at 2741.309 kb on - strand, within yfaA at 2741.407 kb on - strand at 2741.407 kb on - strand at 2741.621 kb on + strand, within yfaT at 2741.669 kb on - strand, within yfaT at 2741.852 kb on - strand, within yfaT at 2741.907 kb on - strand, within yfaT at 2741.963 kb on + strand, within yfaT at 2741.964 kb on - strand, within yfaT at 2741.992 kb on + strand, within yfaT at 2741.992 kb on + strand, within yfaT at 2741.992 kb on + strand, within yfaT at 2741.993 kb on - strand, within yfaT at 2742.055 kb on - strand, within yfaT at 2742.115 kb on + strand at 2742.213 kb on + strand at 2742.365 kb on + strand at 2742.366 kb on - strand at 2742.366 kb on - strand at 2742.456 kb on - strand at 2742.483 kb on + strand at 2742.512 kb on + strand at 2742.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,739,712 + +0.5 2,739,712 + +0.1 2,739,769 + +0.0 2,739,814 - -0.5 2,739,816 - +0.1 2,739,869 + -0.1 2,739,869 + -0.3 2,739,930 - -0.8 2,740,103 + yfaA BNILDI_13640 0.16 -0.1 2,740,186 + yfaA BNILDI_13640 0.21 -0.1 2,740,187 - yfaA BNILDI_13640 0.21 +0.9 2,740,207 - yfaA BNILDI_13640 0.22 -0.7 2,740,262 + yfaA BNILDI_13640 0.25 -0.6 2,740,262 + yfaA BNILDI_13640 0.25 +0.2 2,740,262 + yfaA BNILDI_13640 0.25 +1.1 2,740,263 - yfaA BNILDI_13640 0.25 +0.1 2,740,263 - yfaA BNILDI_13640 0.25 +1.5 2,740,264 + yfaA BNILDI_13640 0.26 +0.5 2,740,264 + yfaA BNILDI_13640 0.26 +0.5 2,740,264 + yfaA BNILDI_13640 0.26 -0.1 2,740,265 - yfaA BNILDI_13640 0.26 +0.8 2,740,372 - yfaA BNILDI_13640 0.32 +1.9 2,740,375 + yfaA BNILDI_13640 0.32 -1.9 2,740,375 + yfaA BNILDI_13640 0.32 +0.2 2,740,384 + yfaA BNILDI_13640 0.33 -0.1 2,740,406 + yfaA BNILDI_13640 0.34 -0.0 2,740,408 + yfaA BNILDI_13640 0.34 -0.9 2,740,474 + yfaA BNILDI_13640 0.38 -0.3 2,740,474 + yfaA BNILDI_13640 0.38 +0.0 2,740,475 - yfaA BNILDI_13640 0.38 -0.1 2,740,484 - yfaA BNILDI_13640 0.39 +0.0 2,740,654 - yfaA BNILDI_13640 0.49 -0.4 2,740,705 + yfaA BNILDI_13640 0.52 -0.2 2,740,777 + yfaA BNILDI_13640 0.56 -0.5 2,740,777 + yfaA BNILDI_13640 0.56 -2.0 2,740,778 - yfaA BNILDI_13640 0.56 +0.1 2,741,005 + yfaA BNILDI_13640 0.69 +0.7 2,741,149 - yfaA BNILDI_13640 0.78 +0.2 2,741,277 + yfaA BNILDI_13640 0.85 +0.3 2,741,278 - yfaA BNILDI_13640 0.86 +0.6 2,741,278 - yfaA BNILDI_13640 0.86 +0.5 2,741,278 - yfaA BNILDI_13640 0.86 +0.1 2,741,278 - yfaA BNILDI_13640 0.86 -0.9 2,741,306 + yfaA BNILDI_13640 0.87 +0.9 2,741,309 - yfaA BNILDI_13640 0.87 +0.8 2,741,407 - +0.1 2,741,407 - +0.1 2,741,621 + yfaT BNILDI_13645 0.17 +0.1 2,741,669 - yfaT BNILDI_13645 0.24 +0.8 2,741,852 - yfaT BNILDI_13645 0.54 -0.5 2,741,907 - yfaT BNILDI_13645 0.62 -0.3 2,741,963 + yfaT BNILDI_13645 0.71 +0.8 2,741,964 - yfaT BNILDI_13645 0.71 +0.6 2,741,992 + yfaT BNILDI_13645 0.76 -0.8 2,741,992 + yfaT BNILDI_13645 0.76 -2.1 2,741,992 + yfaT BNILDI_13645 0.76 +1.7 2,741,993 - yfaT BNILDI_13645 0.76 -0.0 2,742,055 - yfaT BNILDI_13645 0.86 -0.1 2,742,115 + +0.2 2,742,213 + -0.5 2,742,365 + +0.5 2,742,366 - +0.8 2,742,366 - -0.4 2,742,456 - +1.7 2,742,483 + -2.2 2,742,512 + +0.3 2,742,513 - -0.6
Or see this region's nucleotide sequence