Strain Fitness in Escherichia coli ECRC62 around BNILDI_12205

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntder and BNILDI_12200 are separated by 68 nucleotidesBNILDI_12200 and xseA overlap by 4 nucleotidesxseA and guaB are separated by 161 nucleotides BNILDI_12195: der - ribosome biogenesis GTPase Der, at 2,447,728 to 2,449,200 der BNILDI_12200: BNILDI_12200 - Protein, at 2,449,269 to 2,449,484 _12200 BNILDI_12205: xseA - exodeoxyribonuclease VII large subunit, at 2,449,481 to 2,450,851 xseA BNILDI_12210: guaB - IMP dehydrogenase, at 2,451,013 to 2,452,479 guaB Position (kb) 2449 2450 2451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2449.199 kb on - strandat 2449.212 kb on + strandat 2449.233 kb on + strandat 2449.241 kb on + strandat 2449.241 kb on + strandat 2449.268 kb on + strandat 2449.269 kb on - strandat 2449.422 kb on + strand, within BNILDI_12200at 2449.423 kb on - strand, within BNILDI_12200at 2449.423 kb on - strand, within BNILDI_12200at 2449.423 kb on - strand, within BNILDI_12200at 2449.624 kb on + strand, within xseAat 2449.963 kb on + strand, within xseAat 2450.043 kb on - strand, within xseAat 2450.337 kb on + strand, within xseAat 2450.386 kb on + strand, within xseAat 2450.386 kb on + strand, within xseAat 2450.386 kb on + strand, within xseAat 2450.386 kb on + strand, within xseAat 2450.460 kb on + strand, within xseAat 2450.461 kb on - strand, within xseAat 2450.461 kb on - strand, within xseAat 2450.511 kb on + strand, within xseAat 2450.549 kb on - strand, within xseAat 2450.587 kb on - strand, within xseAat 2450.587 kb on - strand, within xseAat 2450.593 kb on + strand, within xseAat 2450.596 kb on + strand, within xseAat 2450.705 kb on - strand, within xseAat 2450.967 kb on - strandat 2450.984 kb on + strandat 2451.017 kb on + strandat 2451.021 kb on + strandat 2451.075 kb on + strandat 2451.466 kb on + strand, within guaBat 2451.466 kb on + strand, within guaBat 2451.466 kb on + strand, within guaBat 2451.810 kb on + strand, within guaB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,449,199 - +0.1
2,449,212 + -0.1
2,449,233 + -3.6
2,449,241 + +0.0
2,449,241 + +0.2
2,449,268 + +1.2
2,449,269 - -0.1
2,449,422 + BNILDI_12200 0.71 -0.0
2,449,423 - BNILDI_12200 0.71 -1.1
2,449,423 - BNILDI_12200 0.71 -0.3
2,449,423 - BNILDI_12200 0.71 +0.2
2,449,624 + xseA BNILDI_12205 0.10 -0.1
2,449,963 + xseA BNILDI_12205 0.35 +0.7
2,450,043 - xseA BNILDI_12205 0.41 +0.2
2,450,337 + xseA BNILDI_12205 0.62 +0.1
2,450,386 + xseA BNILDI_12205 0.66 -0.7
2,450,386 + xseA BNILDI_12205 0.66 -0.6
2,450,386 + xseA BNILDI_12205 0.66 +1.0
2,450,386 + xseA BNILDI_12205 0.66 +0.3
2,450,460 + xseA BNILDI_12205 0.71 +0.5
2,450,461 - xseA BNILDI_12205 0.71 +0.8
2,450,461 - xseA BNILDI_12205 0.71 -0.0
2,450,511 + xseA BNILDI_12205 0.75 -0.4
2,450,549 - xseA BNILDI_12205 0.78 +0.3
2,450,587 - xseA BNILDI_12205 0.81 +0.0
2,450,587 - xseA BNILDI_12205 0.81 +0.5
2,450,593 + xseA BNILDI_12205 0.81 +1.9
2,450,596 + xseA BNILDI_12205 0.81 +0.8
2,450,705 - xseA BNILDI_12205 0.89 -0.1
2,450,967 - -3.7
2,450,984 + -0.2
2,451,017 + -2.2
2,451,021 + -3.1
2,451,075 + -3.0
2,451,466 + guaB BNILDI_12210 0.31 -0.6
2,451,466 + guaB BNILDI_12210 0.31 -3.8
2,451,466 + guaB BNILDI_12210 0.31 -2.6
2,451,810 + guaB BNILDI_12210 0.54 -0.4

Or see this region's nucleotide sequence