Strain Fitness in Escherichia coli ECRC62 around BNILDI_11670

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrimM and trmD are separated by 30 nucleotidestrmD and rplS are separated by 41 nucleotidesrplS and yfiB are separated by 76 nucleotidesyfiB and dgcN are separated by 15 nucleotides BNILDI_11660: rimM - ribosome maturation factor RimM, at 2,339,956 to 2,340,504 rimM BNILDI_11665: trmD - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 2,340,535 to 2,341,302 trmD BNILDI_11670: rplS - 50S ribosomal protein L19, at 2,341,344 to 2,341,691 rplS BNILDI_11675: yfiB - OmpA family protein, at 2,341,768 to 2,342,250 yfiB BNILDI_11680: dgcN - diguanylate cyclase DgcN, at 2,342,266 to 2,343,492 dgcN Position (kb) 2341 2342Strain fitness (log2 ratio) -2 -1 0 1 2at 2341.779 kb on + strandat 2341.952 kb on + strand, within yfiBat 2341.952 kb on + strand, within yfiBat 2341.967 kb on + strand, within yfiBat 2341.967 kb on + strand, within yfiBat 2341.968 kb on - strand, within yfiBat 2341.968 kb on - strand, within yfiBat 2341.968 kb on - strand, within yfiBat 2341.968 kb on - strand, within yfiBat 2342.207 kb on - strandat 2342.209 kb on + strandat 2342.210 kb on - strandat 2342.258 kb on + strandat 2342.259 kb on - strandat 2342.306 kb on + strandat 2342.307 kb on - strandat 2342.307 kb on - strandat 2342.310 kb on + strandat 2342.310 kb on + strandat 2342.310 kb on + strandat 2342.311 kb on - strandat 2342.311 kb on - strandat 2342.311 kb on - strandat 2342.311 kb on - strandat 2342.380 kb on + strandat 2342.381 kb on - strandat 2342.381 kb on - strandat 2342.452 kb on + strand, within dgcNat 2342.453 kb on - strand, within dgcNat 2342.480 kb on - strand, within dgcNat 2342.487 kb on - strand, within dgcNat 2342.530 kb on - strand, within dgcNat 2342.530 kb on - strand, within dgcNat 2342.530 kb on - strand, within dgcNat 2342.616 kb on + strand, within dgcNat 2342.619 kb on - strand, within dgcNat 2342.645 kb on - strand, within dgcN

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,341,779 + +0.0
2,341,952 + yfiB BNILDI_11675 0.38 +1.1
2,341,952 + yfiB BNILDI_11675 0.38 +0.4
2,341,967 + yfiB BNILDI_11675 0.41 -0.4
2,341,967 + yfiB BNILDI_11675 0.41 -2.3
2,341,968 - yfiB BNILDI_11675 0.41 +1.3
2,341,968 - yfiB BNILDI_11675 0.41 -0.6
2,341,968 - yfiB BNILDI_11675 0.41 +0.2
2,341,968 - yfiB BNILDI_11675 0.41 +0.3
2,342,207 - +0.1
2,342,209 + -0.0
2,342,210 - -0.7
2,342,258 + -0.0
2,342,259 - -0.6
2,342,306 + +2.1
2,342,307 - +0.4
2,342,307 - -0.3
2,342,310 + +0.4
2,342,310 + +0.9
2,342,310 + -0.6
2,342,311 - +1.0
2,342,311 - +0.4
2,342,311 - -0.4
2,342,311 - +0.3
2,342,380 + -0.7
2,342,381 - +0.1
2,342,381 - +2.3
2,342,452 + dgcN BNILDI_11680 0.15 -1.1
2,342,453 - dgcN BNILDI_11680 0.15 +0.1
2,342,480 - dgcN BNILDI_11680 0.17 -0.0
2,342,487 - dgcN BNILDI_11680 0.18 -0.5
2,342,530 - dgcN BNILDI_11680 0.22 -1.9
2,342,530 - dgcN BNILDI_11680 0.22 +0.0
2,342,530 - dgcN BNILDI_11680 0.22 -0.0
2,342,616 + dgcN BNILDI_11680 0.29 -2.2
2,342,619 - dgcN BNILDI_11680 0.29 +0.3
2,342,645 - dgcN BNILDI_11680 0.31 +0.5

Or see this region's nucleotide sequence