Strain Fitness in Escherichia coli ECRC62 around BNILDI_09620

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPhe_trna and yqgA are separated by 105 nucleotidesyqgA and yqgH are separated by 152 nucleotidesyqgH and speC are separated by 161 nucleotides BNILDI_09610: Phe_trna - tRNA-Phe(gaa), at 1,937,081 to 1,937,156 _trna BNILDI_09615: yqgA - Uncharacterized protein YqgA, at 1,937,262 to 1,937,969 yqgA BNILDI_09620: yqgH - Protein YqgH, at 1,938,122 to 1,938,205 yqgH BNILDI_09625: speC - ornithine decarboxylase, at 1,938,367 to 1,940,502 speC Position (kb) 1938 1939Strain fitness (log2 ratio) -2 -1 0 1at 1937.345 kb on + strand, within yqgAat 1937.361 kb on + strand, within yqgAat 1937.361 kb on + strand, within yqgAat 1937.383 kb on - strand, within yqgAat 1937.383 kb on - strand, within yqgAat 1937.433 kb on + strand, within yqgAat 1937.433 kb on + strand, within yqgAat 1937.489 kb on + strand, within yqgAat 1937.490 kb on - strand, within yqgAat 1937.490 kb on - strand, within yqgAat 1937.490 kb on - strand, within yqgAat 1937.490 kb on - strand, within yqgAat 1937.490 kb on - strand, within yqgAat 1937.643 kb on - strand, within yqgAat 1937.653 kb on + strand, within yqgAat 1937.653 kb on + strand, within yqgAat 1937.654 kb on - strand, within yqgAat 1937.688 kb on - strand, within yqgAat 1937.688 kb on - strand, within yqgAat 1937.688 kb on - strand, within yqgAat 1937.767 kb on - strand, within yqgAat 1937.784 kb on - strand, within yqgAat 1937.787 kb on + strand, within yqgAat 1937.787 kb on + strand, within yqgAat 1937.788 kb on - strand, within yqgAat 1937.788 kb on - strand, within yqgAat 1937.831 kb on + strand, within yqgAat 1937.861 kb on + strand, within yqgAat 1937.862 kb on - strand, within yqgAat 1937.882 kb on + strand, within yqgAat 1937.931 kb on + strandat 1937.982 kb on + strandat 1937.982 kb on + strandat 1937.988 kb on + strandat 1937.989 kb on - strandat 1937.989 kb on - strandat 1937.989 kb on - strandat 1938.004 kb on + strandat 1938.007 kb on + strandat 1938.138 kb on + strand, within yqgHat 1938.139 kb on - strand, within yqgHat 1938.184 kb on + strand, within yqgHat 1938.185 kb on - strand, within yqgHat 1938.189 kb on + strand, within yqgHat 1938.210 kb on - strandat 1938.236 kb on + strandat 1938.236 kb on + strandat 1938.260 kb on - strandat 1938.260 kb on - strandat 1938.260 kb on - strandat 1938.341 kb on + strandat 1938.342 kb on - strandat 1938.366 kb on + strandat 1938.520 kb on - strandat 1938.650 kb on - strand, within speCat 1938.676 kb on + strand, within speCat 1938.676 kb on + strand, within speCat 1938.695 kb on - strand, within speCat 1938.823 kb on - strand, within speCat 1938.853 kb on - strand, within speCat 1938.952 kb on - strand, within speCat 1938.974 kb on + strand, within speCat 1939.014 kb on + strand, within speCat 1939.014 kb on + strand, within speCat 1939.015 kb on - strand, within speCat 1939.064 kb on - strand, within speCat 1939.123 kb on - strand, within speC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,937,345 + yqgA BNILDI_09615 0.12 -0.1
1,937,361 + yqgA BNILDI_09615 0.14 -0.2
1,937,361 + yqgA BNILDI_09615 0.14 +0.8
1,937,383 - yqgA BNILDI_09615 0.17 -0.1
1,937,383 - yqgA BNILDI_09615 0.17 -0.4
1,937,433 + yqgA BNILDI_09615 0.24 -1.4
1,937,433 + yqgA BNILDI_09615 0.24 -2.6
1,937,489 + yqgA BNILDI_09615 0.32 +0.3
1,937,490 - yqgA BNILDI_09615 0.32 +0.6
1,937,490 - yqgA BNILDI_09615 0.32 +0.2
1,937,490 - yqgA BNILDI_09615 0.32 -0.1
1,937,490 - yqgA BNILDI_09615 0.32 -0.4
1,937,490 - yqgA BNILDI_09615 0.32 -0.1
1,937,643 - yqgA BNILDI_09615 0.54 +0.1
1,937,653 + yqgA BNILDI_09615 0.55 -0.8
1,937,653 + yqgA BNILDI_09615 0.55 -0.8
1,937,654 - yqgA BNILDI_09615 0.55 -0.1
1,937,688 - yqgA BNILDI_09615 0.60 -0.4
1,937,688 - yqgA BNILDI_09615 0.60 -0.0
1,937,688 - yqgA BNILDI_09615 0.60 +0.4
1,937,767 - yqgA BNILDI_09615 0.71 -0.4
1,937,784 - yqgA BNILDI_09615 0.74 -0.7
1,937,787 + yqgA BNILDI_09615 0.74 +0.2
1,937,787 + yqgA BNILDI_09615 0.74 -2.5
1,937,788 - yqgA BNILDI_09615 0.74 +0.0
1,937,788 - yqgA BNILDI_09615 0.74 -0.6
1,937,831 + yqgA BNILDI_09615 0.80 -0.3
1,937,861 + yqgA BNILDI_09615 0.85 -0.2
1,937,862 - yqgA BNILDI_09615 0.85 -1.4
1,937,882 + yqgA BNILDI_09615 0.88 +0.3
1,937,931 + +0.1
1,937,982 + +0.6
1,937,982 + +0.2
1,937,988 + +0.8
1,937,989 - +0.7
1,937,989 - +0.1
1,937,989 - +0.4
1,938,004 + +0.2
1,938,007 + +0.3
1,938,138 + yqgH BNILDI_09620 0.19 -0.2
1,938,139 - yqgH BNILDI_09620 0.20 +1.4
1,938,184 + yqgH BNILDI_09620 0.74 +0.4
1,938,185 - yqgH BNILDI_09620 0.75 +0.4
1,938,189 + yqgH BNILDI_09620 0.80 -0.0
1,938,210 - +0.0
1,938,236 + +0.7
1,938,236 + -0.3
1,938,260 - +0.3
1,938,260 - -0.9
1,938,260 - -0.0
1,938,341 + +0.1
1,938,342 - +0.1
1,938,366 + +0.6
1,938,520 - +1.0
1,938,650 - speC BNILDI_09625 0.13 +0.0
1,938,676 + speC BNILDI_09625 0.14 +0.4
1,938,676 + speC BNILDI_09625 0.14 +0.7
1,938,695 - speC BNILDI_09625 0.15 +0.3
1,938,823 - speC BNILDI_09625 0.21 -0.5
1,938,853 - speC BNILDI_09625 0.23 -0.7
1,938,952 - speC BNILDI_09625 0.27 +0.1
1,938,974 + speC BNILDI_09625 0.28 +0.1
1,939,014 + speC BNILDI_09625 0.30 -0.5
1,939,014 + speC BNILDI_09625 0.30 -0.0
1,939,015 - speC BNILDI_09625 0.30 +0.1
1,939,064 - speC BNILDI_09625 0.33 -0.4
1,939,123 - speC BNILDI_09625 0.35 +1.1

Or see this region's nucleotide sequence