Strain Fitness in Escherichia coli ECRC62 around BNILDI_03255

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntarsB and arsC are separated by 12 nucleotidesarsC and BNILDI_03250 are separated by 133 nucleotidesBNILDI_03250 and BNILDI_03255 are separated by 106 nucleotidesBNILDI_03255 and BNILDI_03260 are separated by 580 nucleotides BNILDI_03240: arsB - arsenite/antimonite:H(+) antiporter ArsB, at 628,299 to 629,588 arsB BNILDI_03245: arsC - glutaredoxin-dependent arsenate reductase, at 629,601 to 630,026 arsC BNILDI_03250: BNILDI_03250 - transcriptional regulator, at 630,160 to 630,456 _03250 BNILDI_03255: BNILDI_03255 - putative permease, at 630,563 to 631,564 _03255 BNILDI_03260: BNILDI_03260 - YhiS, at 632,145 to 632,990 _03260 Position (kb) 630 631 632Strain fitness (log2 ratio) -2 -1 0 1 2 3at 629.594 kb on + strandat 629.594 kb on + strandat 629.595 kb on - strandat 629.601 kb on - strandat 629.612 kb on + strandat 629.613 kb on - strandat 629.619 kb on + strandat 629.620 kb on - strandat 629.649 kb on - strand, within arsCat 629.651 kb on + strand, within arsCat 629.652 kb on - strand, within arsCat 629.652 kb on - strand, within arsCat 629.781 kb on - strand, within arsCat 630.048 kb on + strandat 630.099 kb on - strandat 630.130 kb on + strandat 630.130 kb on + strandat 630.131 kb on - strandat 630.143 kb on - strandat 630.175 kb on - strandat 630.179 kb on - strandat 630.298 kb on + strand, within BNILDI_03250at 630.298 kb on + strand, within BNILDI_03250at 630.300 kb on + strand, within BNILDI_03250at 630.300 kb on + strand, within BNILDI_03250at 630.300 kb on + strand, within BNILDI_03250at 630.301 kb on - strand, within BNILDI_03250at 630.301 kb on - strand, within BNILDI_03250at 630.301 kb on - strand, within BNILDI_03250at 630.394 kb on + strand, within BNILDI_03250at 630.395 kb on - strand, within BNILDI_03250at 630.418 kb on + strand, within BNILDI_03250at 630.419 kb on - strand, within BNILDI_03250at 630.456 kb on + strandat 630.456 kb on + strandat 630.457 kb on - strandat 630.558 kb on + strandat 630.558 kb on + strandat 630.562 kb on + strandat 630.562 kb on + strandat 630.562 kb on + strandat 630.563 kb on - strandat 630.563 kb on - strandat 630.563 kb on - strandat 630.563 kb on - strandat 630.568 kb on + strandat 630.569 kb on - strandat 630.641 kb on - strandat 630.670 kb on - strand, within BNILDI_03255at 630.773 kb on - strand, within BNILDI_03255at 630.795 kb on + strand, within BNILDI_03255at 630.865 kb on + strand, within BNILDI_03255at 630.923 kb on + strand, within BNILDI_03255at 630.962 kb on - strand, within BNILDI_03255at 630.964 kb on + strand, within BNILDI_03255at 631.061 kb on + strand, within BNILDI_03255at 631.062 kb on - strand, within BNILDI_03255at 631.062 kb on - strand, within BNILDI_03255at 631.063 kb on + strand, within BNILDI_03255at 631.063 kb on + strand, within BNILDI_03255at 631.064 kb on - strand, within BNILDI_03255at 631.064 kb on - strand, within BNILDI_03255at 631.064 kb on - strand, within BNILDI_03255at 631.064 kb on - strand, within BNILDI_03255at 631.064 kb on - strand, within BNILDI_03255at 631.064 kb on - strand, within BNILDI_03255at 631.064 kb on - strand, within BNILDI_03255at 631.100 kb on - strand, within BNILDI_03255at 631.119 kb on + strand, within BNILDI_03255at 631.153 kb on + strand, within BNILDI_03255at 631.154 kb on - strand, within BNILDI_03255at 631.154 kb on - strand, within BNILDI_03255at 631.154 kb on - strand, within BNILDI_03255at 631.154 kb on - strand, within BNILDI_03255at 631.171 kb on - strand, within BNILDI_03255at 631.207 kb on - strand, within BNILDI_03255at 631.207 kb on - strand, within BNILDI_03255at 631.231 kb on - strand, within BNILDI_03255at 631.233 kb on + strand, within BNILDI_03255at 631.233 kb on + strand, within BNILDI_03255at 631.247 kb on - strand, within BNILDI_03255at 631.297 kb on + strand, within BNILDI_03255at 631.344 kb on - strand, within BNILDI_03255at 631.494 kb on + strandat 631.513 kb on + strandat 631.515 kb on + strandat 631.516 kb on - strandat 631.516 kb on - strandat 631.519 kb on - strandat 631.566 kb on + strandat 631.615 kb on + strandat 631.620 kb on - strandat 631.668 kb on - strandat 632.178 kb on - strandat 632.463 kb on - strand, within BNILDI_03260

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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629,594 + +0.2
629,594 + +1.2
629,595 - -0.1
629,601 - +0.5
629,612 + +0.4
629,613 - -1.9
629,619 + -0.4
629,620 - +2.3
629,649 - arsC BNILDI_03245 0.11 +1.3
629,651 + arsC BNILDI_03245 0.12 +0.9
629,652 - arsC BNILDI_03245 0.12 +1.1
629,652 - arsC BNILDI_03245 0.12 +0.2
629,781 - arsC BNILDI_03245 0.42 +0.0
630,048 + +0.6
630,099 - +0.2
630,130 + -0.6
630,130 + +0.1
630,131 - +0.3
630,143 - -0.7
630,175 - +1.1
630,179 - +0.2
630,298 + BNILDI_03250 0.46 +0.0
630,298 + BNILDI_03250 0.46 +0.3
630,300 + BNILDI_03250 0.47 +0.0
630,300 + BNILDI_03250 0.47 -0.4
630,300 + BNILDI_03250 0.47 -2.4
630,301 - BNILDI_03250 0.47 +0.3
630,301 - BNILDI_03250 0.47 +1.2
630,301 - BNILDI_03250 0.47 -0.0
630,394 + BNILDI_03250 0.79 +0.4
630,395 - BNILDI_03250 0.79 -0.4
630,418 + BNILDI_03250 0.87 -1.1
630,419 - BNILDI_03250 0.87 +0.4
630,456 + +0.2
630,456 + +0.2
630,457 - -2.5
630,558 + -0.1
630,558 + -0.7
630,562 + +3.3
630,562 + -0.0
630,562 + +0.2
630,563 - +0.7
630,563 - +0.3
630,563 - +1.4
630,563 - +0.2
630,568 + -0.3
630,569 - -0.0
630,641 - +0.3
630,670 - BNILDI_03255 0.11 -2.6
630,773 - BNILDI_03255 0.21 +0.1
630,795 + BNILDI_03255 0.23 +0.3
630,865 + BNILDI_03255 0.30 -0.0
630,923 + BNILDI_03255 0.36 +0.1
630,962 - BNILDI_03255 0.40 +0.3
630,964 + BNILDI_03255 0.40 +0.7
631,061 + BNILDI_03255 0.50 +0.4
631,062 - BNILDI_03255 0.50 +0.1
631,062 - BNILDI_03255 0.50 -0.3
631,063 + BNILDI_03255 0.50 +0.1
631,063 + BNILDI_03255 0.50 +0.2
631,064 - BNILDI_03255 0.50 -0.3
631,064 - BNILDI_03255 0.50 +1.1
631,064 - BNILDI_03255 0.50 +0.2
631,064 - BNILDI_03255 0.50 -0.1
631,064 - BNILDI_03255 0.50 +0.1
631,064 - BNILDI_03255 0.50 +0.8
631,064 - BNILDI_03255 0.50 -2.6
631,100 - BNILDI_03255 0.54 +0.7
631,119 + BNILDI_03255 0.55 -0.5
631,153 + BNILDI_03255 0.59 -0.5
631,154 - BNILDI_03255 0.59 +1.5
631,154 - BNILDI_03255 0.59 -0.1
631,154 - BNILDI_03255 0.59 +0.4
631,154 - BNILDI_03255 0.59 +0.3
631,171 - BNILDI_03255 0.61 -0.6
631,207 - BNILDI_03255 0.64 +0.1
631,207 - BNILDI_03255 0.64 +0.6
631,231 - BNILDI_03255 0.67 -0.9
631,233 + BNILDI_03255 0.67 +0.9
631,233 + BNILDI_03255 0.67 +0.2
631,247 - BNILDI_03255 0.68 +0.0
631,297 + BNILDI_03255 0.73 +1.5
631,344 - BNILDI_03255 0.78 -0.5
631,494 + +1.0
631,513 + -0.4
631,515 + -0.1
631,516 - -0.2
631,516 - +0.0
631,519 - +0.1
631,566 + -0.1
631,615 + +0.1
631,620 - +0.2
631,668 - +0.0
632,178 - -0.7
632,463 - BNILDI_03260 0.38 -0.5

Or see this region's nucleotide sequence