Strain Fitness in Escherichia coli ECRC62 around BNILDI_01075

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoD and mug are separated by 77 nucleotidesmug and Ile2_trna are separated by 124 nucleotidesIle2_trna and nfeF are separated by 53 nucleotides BNILDI_01070: rpoD - RNA polymerase sigma factor RpoD, at 206,690 to 208,531 rpoD BNILDI_01075: mug - G/U mismatch-specific DNA glycosylase, at 208,609 to 209,115 mug BNILDI_01080: Ile2_trna - tRNA-Ile2(cat), at 209,240 to 209,315 _trna BNILDI_01085: nfeF - NADPH-dependent ferric chelate reductase, at 209,369 to 210,133 nfeF Position (kb) 208 209 210Strain fitness (log2 ratio) -1 0 1 2at 208.685 kb on - strand, within mugat 208.781 kb on + strand, within mugat 208.781 kb on + strand, within mugat 208.906 kb on + strand, within mugat 208.991 kb on + strand, within mugat 208.991 kb on + strand, within mugat 208.991 kb on + strand, within mugat 208.992 kb on - strand, within mugat 208.992 kb on - strand, within mugat 208.992 kb on - strand, within mugat 208.993 kb on + strand, within mugat 208.993 kb on + strand, within mugat 208.993 kb on + strand, within mugat 208.993 kb on + strand, within mugat 209.116 kb on - strandat 209.119 kb on + strandat 209.172 kb on + strandat 209.320 kb on + strandat 209.320 kb on + strandat 209.320 kb on + strandat 209.320 kb on + strandat 209.321 kb on - strandat 209.458 kb on + strand, within nfeFat 209.484 kb on + strand, within nfeFat 209.484 kb on + strand, within nfeFat 209.484 kb on + strand, within nfeFat 209.485 kb on - strand, within nfeFat 209.485 kb on - strand, within nfeFat 209.525 kb on + strand, within nfeFat 209.560 kb on + strand, within nfeFat 209.560 kb on + strand, within nfeFat 209.561 kb on - strand, within nfeFat 209.584 kb on - strand, within nfeFat 209.703 kb on + strand, within nfeFat 209.703 kb on + strand, within nfeFat 209.719 kb on - strand, within nfeFat 209.869 kb on + strand, within nfeFat 209.869 kb on + strand, within nfeFat 209.872 kb on - strand, within nfeF

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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208,685 - mug BNILDI_01075 0.15 -0.2
208,781 + mug BNILDI_01075 0.34 +0.3
208,781 + mug BNILDI_01075 0.34 -0.0
208,906 + mug BNILDI_01075 0.59 +0.8
208,991 + mug BNILDI_01075 0.75 +1.9
208,991 + mug BNILDI_01075 0.75 +0.8
208,991 + mug BNILDI_01075 0.75 -0.3
208,992 - mug BNILDI_01075 0.76 -0.1
208,992 - mug BNILDI_01075 0.76 -0.2
208,992 - mug BNILDI_01075 0.76 +0.5
208,993 + mug BNILDI_01075 0.76 -1.0
208,993 + mug BNILDI_01075 0.76 -1.4
208,993 + mug BNILDI_01075 0.76 +0.2
208,993 + mug BNILDI_01075 0.76 -0.2
209,116 - +0.3
209,119 + +0.8
209,172 + +1.5
209,320 + -0.4
209,320 + -0.4
209,320 + +0.5
209,320 + +0.2
209,321 - +0.8
209,458 + nfeF BNILDI_01085 0.12 -0.4
209,484 + nfeF BNILDI_01085 0.15 -0.3
209,484 + nfeF BNILDI_01085 0.15 -0.3
209,484 + nfeF BNILDI_01085 0.15 -0.1
209,485 - nfeF BNILDI_01085 0.15 +0.1
209,485 - nfeF BNILDI_01085 0.15 +0.5
209,525 + nfeF BNILDI_01085 0.20 -1.7
209,560 + nfeF BNILDI_01085 0.25 -1.5
209,560 + nfeF BNILDI_01085 0.25 -1.1
209,561 - nfeF BNILDI_01085 0.25 -1.1
209,584 - nfeF BNILDI_01085 0.28 +0.3
209,703 + nfeF BNILDI_01085 0.44 +0.2
209,703 + nfeF BNILDI_01085 0.44 +0.1
209,719 - nfeF BNILDI_01085 0.46 -0.4
209,869 + nfeF BNILDI_01085 0.65 -0.9
209,869 + nfeF BNILDI_01085 0.65 -0.6
209,872 - nfeF BNILDI_01085 0.66 +0.1

Or see this region's nucleotide sequence