Strain Fitness in Escherichia coli ECRC62 around BNILDI_00745

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthybO and yghW are separated by 188 nucleotidesyghW and dLH are separated by 118 nucleotidesdLH and gpr are separated by 156 nucleotides BNILDI_00735: hybO - hydrogenase 2 small subunit, at 142,371 to 143,489 hybO BNILDI_00740: yghW - Uncharacterized protein YghW, at 143,678 to 143,965 yghW BNILDI_00745: dLH - dienelactone hydrolase, at 144,084 to 144,971 dLH BNILDI_00750: gpr - L-glyceraldehyde 3-phosphate reductase, at 145,128 to 146,168 gpr Position (kb) 144 145Strain fitness (log2 ratio) -2 -1 0 1at 143.181 kb on - strand, within hybOat 143.337 kb on - strand, within hybOat 143.357 kb on + strand, within hybOat 143.394 kb on - strandat 143.398 kb on - strandat 143.493 kb on + strandat 143.498 kb on - strandat 143.522 kb on + strandat 143.569 kb on - strandat 143.580 kb on - strandat 143.583 kb on - strandat 143.639 kb on + strandat 143.639 kb on + strandat 143.644 kb on + strandat 143.644 kb on + strandat 143.653 kb on - strandat 143.669 kb on + strandat 143.669 kb on + strandat 143.835 kb on + strand, within yghWat 143.835 kb on + strand, within yghWat 143.850 kb on + strand, within yghWat 143.851 kb on - strand, within yghWat 143.855 kb on + strand, within yghWat 143.858 kb on + strand, within yghWat 143.873 kb on - strand, within yghWat 143.873 kb on - strand, within yghWat 143.874 kb on + strand, within yghWat 143.899 kb on + strand, within yghWat 143.940 kb on - strandat 143.948 kb on - strandat 144.037 kb on - strandat 144.055 kb on - strandat 144.098 kb on + strandat 144.098 kb on + strandat 144.098 kb on + strandat 144.196 kb on + strand, within dLHat 144.201 kb on - strand, within dLHat 144.201 kb on - strand, within dLHat 144.201 kb on - strand, within dLHat 144.202 kb on + strand, within dLHat 144.202 kb on + strand, within dLHat 144.203 kb on - strand, within dLHat 144.212 kb on - strand, within dLHat 144.218 kb on + strand, within dLHat 144.221 kb on + strand, within dLHat 144.244 kb on + strand, within dLHat 144.294 kb on + strand, within dLHat 144.298 kb on - strand, within dLHat 144.428 kb on + strand, within dLHat 144.465 kb on - strand, within dLHat 144.570 kb on + strand, within dLHat 144.570 kb on + strand, within dLHat 144.634 kb on + strand, within dLHat 144.712 kb on + strand, within dLHat 144.721 kb on - strand, within dLHat 144.748 kb on + strand, within dLHat 144.749 kb on - strand, within dLHat 144.749 kb on - strand, within dLHat 144.757 kb on + strand, within dLHat 144.790 kb on - strand, within dLHat 144.808 kb on + strand, within dLHat 144.862 kb on + strand, within dLHat 144.862 kb on + strand, within dLHat 144.914 kb on - strandat 144.923 kb on - strandat 144.923 kb on - strandat 144.923 kb on - strandat 144.926 kb on - strandat 144.960 kb on + strandat 145.011 kb on - strandat 145.156 kb on - strandat 145.222 kb on + strandat 145.406 kb on + strand, within gprat 145.431 kb on - strand, within gprat 145.467 kb on - strand, within gprat 145.505 kb on + strand, within gprat 145.518 kb on + strand, within gprat 145.518 kb on + strand, within gprat 145.518 kb on + strand, within gprat 145.533 kb on + strand, within gprat 145.533 kb on + strand, within gprat 145.617 kb on + strand, within gprat 145.618 kb on - strand, within gprat 145.713 kb on + strand, within gprat 145.904 kb on + strand, within gprat 145.933 kb on + strand, within gpr

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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143,181 - hybO BNILDI_00735 0.72 -1.2
143,337 - hybO BNILDI_00735 0.86 +0.0
143,357 + hybO BNILDI_00735 0.88 -0.2
143,394 - +0.5
143,398 - -0.3
143,493 + +1.2
143,498 - +0.3
143,522 + -1.8
143,569 - +0.2
143,580 - -0.9
143,583 - +0.0
143,639 + -0.3
143,639 + -2.5
143,644 + -0.5
143,644 + +0.2
143,653 - +1.4
143,669 + -0.2
143,669 + +0.1
143,835 + yghW BNILDI_00740 0.55 +0.7
143,835 + yghW BNILDI_00740 0.55 +0.4
143,850 + yghW BNILDI_00740 0.60 -0.2
143,851 - yghW BNILDI_00740 0.60 +0.9
143,855 + yghW BNILDI_00740 0.61 +0.4
143,858 + yghW BNILDI_00740 0.62 -0.2
143,873 - yghW BNILDI_00740 0.68 -0.5
143,873 - yghW BNILDI_00740 0.68 +1.0
143,874 + yghW BNILDI_00740 0.68 -0.7
143,899 + yghW BNILDI_00740 0.77 +0.0
143,940 - +0.3
143,948 - -0.2
144,037 - -0.5
144,055 - -0.5
144,098 + +0.8
144,098 + +0.3
144,098 + +0.3
144,196 + dLH BNILDI_00745 0.13 -0.3
144,201 - dLH BNILDI_00745 0.13 -0.1
144,201 - dLH BNILDI_00745 0.13 -0.2
144,201 - dLH BNILDI_00745 0.13 +0.7
144,202 + dLH BNILDI_00745 0.13 -2.2
144,202 + dLH BNILDI_00745 0.13 +0.7
144,203 - dLH BNILDI_00745 0.13 +0.0
144,212 - dLH BNILDI_00745 0.14 +0.1
144,218 + dLH BNILDI_00745 0.15 +0.9
144,221 + dLH BNILDI_00745 0.15 +0.2
144,244 + dLH BNILDI_00745 0.18 -1.0
144,294 + dLH BNILDI_00745 0.24 -0.9
144,298 - dLH BNILDI_00745 0.24 +1.7
144,428 + dLH BNILDI_00745 0.39 -0.5
144,465 - dLH BNILDI_00745 0.43 +0.1
144,570 + dLH BNILDI_00745 0.55 -0.7
144,570 + dLH BNILDI_00745 0.55 -1.9
144,634 + dLH BNILDI_00745 0.62 +0.9
144,712 + dLH BNILDI_00745 0.71 +0.9
144,721 - dLH BNILDI_00745 0.72 +0.1
144,748 + dLH BNILDI_00745 0.75 +0.3
144,749 - dLH BNILDI_00745 0.75 +0.3
144,749 - dLH BNILDI_00745 0.75 +0.0
144,757 + dLH BNILDI_00745 0.76 -0.6
144,790 - dLH BNILDI_00745 0.80 +0.5
144,808 + dLH BNILDI_00745 0.82 +0.8
144,862 + dLH BNILDI_00745 0.88 +0.2
144,862 + dLH BNILDI_00745 0.88 +0.1
144,914 - +0.3
144,923 - +1.2
144,923 - +0.1
144,923 - -0.7
144,926 - -0.9
144,960 + -0.6
145,011 - +0.2
145,156 - -0.4
145,222 + +0.8
145,406 + gpr BNILDI_00750 0.27 -0.0
145,431 - gpr BNILDI_00750 0.29 -0.0
145,467 - gpr BNILDI_00750 0.33 -0.3
145,505 + gpr BNILDI_00750 0.36 +0.8
145,518 + gpr BNILDI_00750 0.37 -0.4
145,518 + gpr BNILDI_00750 0.37 -0.4
145,518 + gpr BNILDI_00750 0.37 -0.4
145,533 + gpr BNILDI_00750 0.39 +0.1
145,533 + gpr BNILDI_00750 0.39 -0.1
145,617 + gpr BNILDI_00750 0.47 +0.0
145,618 - gpr BNILDI_00750 0.47 +0.6
145,713 + gpr BNILDI_00750 0.56 -0.3
145,904 + gpr BNILDI_00750 0.75 -1.2
145,933 + gpr BNILDI_00750 0.77 -0.8

Or see this region's nucleotide sequence