Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_00630 and lptG are separated by 34 nucleotides lptG and lptF overlap by 4 nucleotides
BNILDI_00630: BNILDI_00630 - 8-amino-7-oxononanoate synthase, at 122,223 to 123,395
_00630
BNILDI_00635: lptG - LPS export ABC transporter permease LptG, at 123,430 to 124,509
lptG
BNILDI_00640: lptF - LPS export ABC transporter permease LptF, at 124,506 to 125,576
lptF
Position (kb) 123
124
125 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 122.561 kb on + strand, within BNILDI_00630 at 122.643 kb on + strand, within BNILDI_00630 at 122.644 kb on - strand, within BNILDI_00630 at 122.676 kb on - strand, within BNILDI_00630 at 122.772 kb on + strand, within BNILDI_00630 at 122.773 kb on - strand, within BNILDI_00630 at 122.773 kb on - strand, within BNILDI_00630 at 122.839 kb on - strand, within BNILDI_00630 at 122.934 kb on - strand, within BNILDI_00630 at 122.942 kb on + strand, within BNILDI_00630 at 123.030 kb on - strand, within BNILDI_00630 at 123.144 kb on + strand, within BNILDI_00630 at 123.185 kb on + strand, within BNILDI_00630 at 123.188 kb on + strand, within BNILDI_00630 at 123.188 kb on + strand, within BNILDI_00630 at 123.267 kb on + strand, within BNILDI_00630 at 123.278 kb on + strand at 123.329 kb on - strand at 123.381 kb on - strand at 123.453 kb on - strand at 123.453 kb on - strand at 123.453 kb on - strand at 123.555 kb on - strand, within lptG at 123.572 kb on - strand, within lptG at 123.637 kb on - strand, within lptG at 123.637 kb on - strand, within lptG at 123.711 kb on - strand, within lptG at 123.752 kb on + strand, within lptG at 123.752 kb on + strand, within lptG at 123.753 kb on - strand, within lptG at 123.797 kb on - strand, within lptG at 123.813 kb on + strand, within lptG at 123.874 kb on - strand, within lptG at 123.874 kb on - strand, within lptG at 123.944 kb on + strand, within lptG at 123.944 kb on + strand, within lptG at 123.944 kb on + strand, within lptG at 123.944 kb on + strand, within lptG at 124.065 kb on + strand, within lptG at 124.065 kb on + strand, within lptG at 124.348 kb on + strand, within lptG at 124.348 kb on + strand, within lptG at 124.349 kb on - strand, within lptG at 124.444 kb on + strand at 124.444 kb on + strand at 124.585 kb on - strand at 124.687 kb on - strand, within lptF at 124.687 kb on - strand, within lptF at 124.885 kb on - strand, within lptF at 124.885 kb on - strand, within lptF at 124.900 kb on + strand, within lptF at 124.942 kb on + strand, within lptF at 124.943 kb on - strand, within lptF at 124.943 kb on - strand, within lptF at 125.039 kb on + strand, within lptF at 125.039 kb on + strand, within lptF at 125.045 kb on + strand, within lptF at 125.046 kb on - strand, within lptF at 125.047 kb on + strand, within lptF at 125.047 kb on + strand, within lptF at 125.073 kb on - strand, within lptF at 125.120 kb on + strand, within lptF at 125.188 kb on + strand, within lptF at 125.218 kb on + strand, within lptF at 125.218 kb on + strand, within lptF at 125.218 kb on + strand, within lptF at 125.219 kb on - strand, within lptF at 125.219 kb on - strand, within lptF at 125.219 kb on - strand, within lptF at 125.243 kb on + strand, within lptF at 125.248 kb on - strand, within lptF at 125.278 kb on + strand, within lptF at 125.335 kb on + strand, within lptF at 125.335 kb on + strand, within lptF at 125.335 kb on + strand, within lptF at 125.336 kb on - strand, within lptF at 125.336 kb on - strand, within lptF at 125.368 kb on + strand, within lptF at 125.368 kb on + strand, within lptF at 125.368 kb on + strand, within lptF at 125.369 kb on - strand, within lptF at 125.369 kb on - strand, within lptF at 125.446 kb on - strand, within lptF at 125.446 kb on - strand, within lptF
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 122,561 + BNILDI_00630 0.29 +0.5 122,643 + BNILDI_00630 0.36 -0.3 122,644 - BNILDI_00630 0.36 +1.5 122,676 - BNILDI_00630 0.39 -0.4 122,772 + BNILDI_00630 0.47 -1.0 122,773 - BNILDI_00630 0.47 -0.5 122,773 - BNILDI_00630 0.47 +1.2 122,839 - BNILDI_00630 0.53 +0.6 122,934 - BNILDI_00630 0.61 -0.4 122,942 + BNILDI_00630 0.61 +0.8 123,030 - BNILDI_00630 0.69 +0.0 123,144 + BNILDI_00630 0.79 -0.1 123,185 + BNILDI_00630 0.82 +0.4 123,188 + BNILDI_00630 0.82 +4.2 123,188 + BNILDI_00630 0.82 -0.1 123,267 + BNILDI_00630 0.89 +1.3 123,278 + +1.1 123,329 - +0.2 123,381 - -1.4 123,453 - +0.1 123,453 - +0.5 123,453 - -0.9 123,555 - lptG BNILDI_00635 0.12 +1.2 123,572 - lptG BNILDI_00635 0.13 -3.0 123,637 - lptG BNILDI_00635 0.19 -0.8 123,637 - lptG BNILDI_00635 0.19 -0.3 123,711 - lptG BNILDI_00635 0.26 -0.1 123,752 + lptG BNILDI_00635 0.30 +0.2 123,752 + lptG BNILDI_00635 0.30 +2.1 123,753 - lptG BNILDI_00635 0.30 +0.7 123,797 - lptG BNILDI_00635 0.34 -0.4 123,813 + lptG BNILDI_00635 0.35 +0.2 123,874 - lptG BNILDI_00635 0.41 -1.3 123,874 - lptG BNILDI_00635 0.41 +0.6 123,944 + lptG BNILDI_00635 0.48 +0.9 123,944 + lptG BNILDI_00635 0.48 -1.4 123,944 + lptG BNILDI_00635 0.48 +0.4 123,944 + lptG BNILDI_00635 0.48 +0.3 124,065 + lptG BNILDI_00635 0.59 -0.2 124,065 + lptG BNILDI_00635 0.59 +0.1 124,348 + lptG BNILDI_00635 0.85 -1.1 124,348 + lptG BNILDI_00635 0.85 +0.6 124,349 - lptG BNILDI_00635 0.85 +0.0 124,444 + -0.0 124,444 + -1.5 124,585 - -0.7 124,687 - lptF BNILDI_00640 0.17 +0.2 124,687 - lptF BNILDI_00640 0.17 -0.3 124,885 - lptF BNILDI_00640 0.35 -1.1 124,885 - lptF BNILDI_00640 0.35 +0.1 124,900 + lptF BNILDI_00640 0.37 -0.6 124,942 + lptF BNILDI_00640 0.41 -1.1 124,943 - lptF BNILDI_00640 0.41 -2.4 124,943 - lptF BNILDI_00640 0.41 +1.0 125,039 + lptF BNILDI_00640 0.50 +0.1 125,039 + lptF BNILDI_00640 0.50 +0.4 125,045 + lptF BNILDI_00640 0.50 +1.2 125,046 - lptF BNILDI_00640 0.50 +0.5 125,047 + lptF BNILDI_00640 0.51 -0.3 125,047 + lptF BNILDI_00640 0.51 -0.0 125,073 - lptF BNILDI_00640 0.53 -0.2 125,120 + lptF BNILDI_00640 0.57 -0.1 125,188 + lptF BNILDI_00640 0.64 -0.3 125,218 + lptF BNILDI_00640 0.66 -0.4 125,218 + lptF BNILDI_00640 0.66 -2.0 125,218 + lptF BNILDI_00640 0.66 -0.3 125,219 - lptF BNILDI_00640 0.67 +0.7 125,219 - lptF BNILDI_00640 0.67 +0.6 125,219 - lptF BNILDI_00640 0.67 +0.0 125,243 + lptF BNILDI_00640 0.69 +0.8 125,248 - lptF BNILDI_00640 0.69 -0.1 125,278 + lptF BNILDI_00640 0.72 +0.4 125,335 + lptF BNILDI_00640 0.77 -0.2 125,335 + lptF BNILDI_00640 0.77 -1.1 125,335 + lptF BNILDI_00640 0.77 -0.1 125,336 - lptF BNILDI_00640 0.77 +0.8 125,336 - lptF BNILDI_00640 0.77 -0.2 125,368 + lptF BNILDI_00640 0.80 -0.5 125,368 + lptF BNILDI_00640 0.80 +0.7 125,368 + lptF BNILDI_00640 0.80 +0.2 125,369 - lptF BNILDI_00640 0.81 -0.6 125,369 - lptF BNILDI_00640 0.81 -0.0 125,446 - lptF BNILDI_00640 0.88 +0.7 125,446 - lptF BNILDI_00640 0.88 +0.5
Or see this region's nucleotide sequence