Strain Fitness in Erwinia amylovora T8 around OLJFJH_08775

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08770 and OLJFJH_08775 are separated by 437 nucleotidesOLJFJH_08775 and OLJFJH_08780 are separated by 23 nucleotidesOLJFJH_08780 and OLJFJH_08785 are separated by 70 nucleotides OLJFJH_08770: OLJFJH_08770 - FAD-dependent 2-octaprenylphenol hydroxylase, at 1,795,389 to 1,796,591 _08770 OLJFJH_08775: OLJFJH_08775 - glycine cleavage system aminomethyltransferase GcvT, at 1,797,029 to 1,798,126 _08775 OLJFJH_08780: OLJFJH_08780 - glycine cleavage system protein GcvH, at 1,798,150 to 1,798,536 _08780 OLJFJH_08785: OLJFJH_08785 - aminomethyl-transferring glycine dehydrogenase, at 1,798,607 to 1,801,468 _08785 Position (kb) 1797 1798 1799Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1796.603 kb on + strandat 1796.604 kb on - strandat 1796.659 kb on + strandat 1796.695 kb on + strandat 1796.732 kb on + strandat 1796.824 kb on + strandat 1796.825 kb on - strandat 1796.825 kb on - strandat 1796.825 kb on - strandat 1796.833 kb on + strandat 1796.838 kb on + strandat 1796.881 kb on + strandat 1796.881 kb on + strandat 1796.912 kb on + strandat 1796.913 kb on - strandat 1796.917 kb on + strandat 1796.923 kb on + strandat 1797.028 kb on + strandat 1797.028 kb on + strandat 1797.281 kb on + strand, within OLJFJH_08775at 1797.282 kb on - strand, within OLJFJH_08775at 1797.282 kb on - strand, within OLJFJH_08775at 1797.283 kb on + strand, within OLJFJH_08775at 1797.332 kb on + strand, within OLJFJH_08775at 1797.337 kb on + strand, within OLJFJH_08775at 1797.423 kb on - strand, within OLJFJH_08775at 1797.778 kb on + strand, within OLJFJH_08775at 1798.124 kb on + strandat 1798.125 kb on - strandat 1798.125 kb on - strandat 1798.303 kb on + strand, within OLJFJH_08780at 1798.303 kb on + strand, within OLJFJH_08780at 1798.303 kb on + strand, within OLJFJH_08780at 1798.360 kb on + strand, within OLJFJH_08780at 1798.360 kb on + strand, within OLJFJH_08780at 1798.360 kb on + strand, within OLJFJH_08780at 1798.360 kb on + strand, within OLJFJH_08780at 1798.361 kb on - strand, within OLJFJH_08780at 1798.361 kb on - strand, within OLJFJH_08780at 1798.361 kb on - strand, within OLJFJH_08780at 1798.818 kb on + strandat 1798.849 kb on + strandat 1798.850 kb on - strandat 1798.857 kb on - strandat 1798.872 kb on - strandat 1798.909 kb on + strand, within OLJFJH_08785at 1798.909 kb on + strand, within OLJFJH_08785at 1798.909 kb on + strand, within OLJFJH_08785at 1798.932 kb on - strand, within OLJFJH_08785at 1798.942 kb on + strand, within OLJFJH_08785at 1798.942 kb on + strand, within OLJFJH_08785at 1798.943 kb on - strand, within OLJFJH_08785at 1798.950 kb on - strand, within OLJFJH_08785at 1798.990 kb on + strand, within OLJFJH_08785at 1798.991 kb on - strand, within OLJFJH_08785at 1799.004 kb on + strand, within OLJFJH_08785

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-2
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1,796,603 + -0.4
1,796,604 - +1.1
1,796,659 + -0.9
1,796,695 + +1.1
1,796,732 + -0.0
1,796,824 + -0.1
1,796,825 - +0.0
1,796,825 - -1.2
1,796,825 - +0.2
1,796,833 + -0.3
1,796,838 + +0.0
1,796,881 + -1.5
1,796,881 + +0.2
1,796,912 + -0.0
1,796,913 - -0.1
1,796,917 + -2.1
1,796,923 + -0.8
1,797,028 + -0.6
1,797,028 + -0.5
1,797,281 + OLJFJH_08775 0.23 -0.8
1,797,282 - OLJFJH_08775 0.23 -0.5
1,797,282 - OLJFJH_08775 0.23 -0.5
1,797,283 + OLJFJH_08775 0.23 -0.3
1,797,332 + OLJFJH_08775 0.28 -0.9
1,797,337 + OLJFJH_08775 0.28 -0.5
1,797,423 - OLJFJH_08775 0.36 -0.7
1,797,778 + OLJFJH_08775 0.68 -2.3
1,798,124 + +0.1
1,798,125 - -0.8
1,798,125 - -1.4
1,798,303 + OLJFJH_08780 0.40 -1.3
1,798,303 + OLJFJH_08780 0.40 -0.5
1,798,303 + OLJFJH_08780 0.40 -0.4
1,798,360 + OLJFJH_08780 0.54 -2.8
1,798,360 + OLJFJH_08780 0.54 -1.3
1,798,360 + OLJFJH_08780 0.54 +0.6
1,798,360 + OLJFJH_08780 0.54 +0.6
1,798,361 - OLJFJH_08780 0.55 -0.3
1,798,361 - OLJFJH_08780 0.55 +0.1
1,798,361 - OLJFJH_08780 0.55 -2.2
1,798,818 + -0.8
1,798,849 + -0.4
1,798,850 - +0.6
1,798,857 - -3.0
1,798,872 - -0.1
1,798,909 + OLJFJH_08785 0.11 +4.4
1,798,909 + OLJFJH_08785 0.11 -3.1
1,798,909 + OLJFJH_08785 0.11 -0.4
1,798,932 - OLJFJH_08785 0.11 -1.8
1,798,942 + OLJFJH_08785 0.12 -0.3
1,798,942 + OLJFJH_08785 0.12 +0.5
1,798,943 - OLJFJH_08785 0.12 +0.1
1,798,950 - OLJFJH_08785 0.12 +0.2
1,798,990 + OLJFJH_08785 0.13 -1.2
1,798,991 - OLJFJH_08785 0.13 +1.1
1,799,004 + OLJFJH_08785 0.14 -1.7

Or see this region's nucleotide sequence