Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04075 and OLJFJH_04080 are separated by 37 nucleotides OLJFJH_04080 and OLJFJH_04085 are separated by 119 nucleotides OLJFJH_04085 and OLJFJH_04090 are separated by 91 nucleotides
OLJFJH_04075: OLJFJH_04075 - ribulose-phosphate 3-epimerase, at 774,554 to 775,240
_04075
OLJFJH_04080: OLJFJH_04080 - adenine-specific DNA-methyltransferase, at 775,278 to 776,099
_04080
OLJFJH_04085: OLJFJH_04085 - cell division protein DamX, at 776,219 to 777,175
_04085
OLJFJH_04090: OLJFJH_04090 - 3-dehydroquinate synthase, at 777,267 to 778,355
_04090
Position (kb) 776
777
778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 775.292 kb on - strand at 775.292 kb on - strand at 775.292 kb on - strand at 775.292 kb on - strand at 775.434 kb on - strand, within OLJFJH_04080 at 775.675 kb on + strand, within OLJFJH_04080 at 775.744 kb on + strand, within OLJFJH_04080 at 775.745 kb on - strand, within OLJFJH_04080 at 775.745 kb on - strand, within OLJFJH_04080 at 775.757 kb on + strand, within OLJFJH_04080 at 775.763 kb on - strand, within OLJFJH_04080 at 775.764 kb on + strand, within OLJFJH_04080 at 775.825 kb on + strand, within OLJFJH_04080 at 775.825 kb on + strand, within OLJFJH_04080 at 775.829 kb on - strand, within OLJFJH_04080 at 775.829 kb on - strand, within OLJFJH_04080 at 775.829 kb on - strand, within OLJFJH_04080 at 775.949 kb on + strand, within OLJFJH_04080 at 775.951 kb on + strand, within OLJFJH_04080 at 775.952 kb on - strand, within OLJFJH_04080 at 776.057 kb on - strand at 776.060 kb on + strand at 776.060 kb on + strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.112 kb on + strand at 776.112 kb on + strand at 776.112 kb on + strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.117 kb on - strand at 776.117 kb on - strand at 776.117 kb on - strand at 776.117 kb on - strand at 776.147 kb on + strand at 776.147 kb on + strand at 776.147 kb on + strand at 776.147 kb on + strand at 776.148 kb on - strand at 776.148 kb on - strand at 776.148 kb on - strand at 776.159 kb on - strand at 776.220 kb on + strand at 776.279 kb on + strand at 776.279 kb on + strand at 776.279 kb on + strand at 776.279 kb on + strand at 776.331 kb on + strand, within OLJFJH_04085 at 776.352 kb on + strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.383 kb on - strand, within OLJFJH_04085 at 776.483 kb on - strand, within OLJFJH_04085 at 776.483 kb on - strand, within OLJFJH_04085 at 776.832 kb on - strand, within OLJFJH_04085 at 776.941 kb on + strand, within OLJFJH_04085 at 777.064 kb on + strand, within OLJFJH_04085 at 777.065 kb on - strand, within OLJFJH_04085 at 777.065 kb on - strand, within OLJFJH_04085 at 777.065 kb on - strand, within OLJFJH_04085 at 777.106 kb on + strand at 777.107 kb on - strand at 777.146 kb on + strand at 777.178 kb on - strand at 777.178 kb on - strand at 777.218 kb on - strand at 777.228 kb on + strand at 777.228 kb on + strand at 777.228 kb on + strand at 777.228 kb on + strand at 777.229 kb on - strand at 777.229 kb on - strand at 777.229 kb on - strand at 777.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-2 remove 775,292 - -2.0 775,292 - -2.2 775,292 - -3.1 775,292 - -1.4 775,434 - OLJFJH_04080 0.19 -0.3 775,675 + OLJFJH_04080 0.48 -0.9 775,744 + OLJFJH_04080 0.57 -2.1 775,745 - OLJFJH_04080 0.57 +0.0 775,745 - OLJFJH_04080 0.57 -1.1 775,757 + OLJFJH_04080 0.58 -0.8 775,763 - OLJFJH_04080 0.59 -2.4 775,764 + OLJFJH_04080 0.59 -0.9 775,825 + OLJFJH_04080 0.67 -0.2 775,825 + OLJFJH_04080 0.67 -0.3 775,829 - OLJFJH_04080 0.67 -1.7 775,829 - OLJFJH_04080 0.67 -0.6 775,829 - OLJFJH_04080 0.67 -2.1 775,949 + OLJFJH_04080 0.82 -0.3 775,951 + OLJFJH_04080 0.82 -1.3 775,952 - OLJFJH_04080 0.82 -1.9 776,057 - -1.4 776,060 + -2.2 776,060 + -3.2 776,061 - -1.1 776,061 - -2.4 776,061 - -0.9 776,061 - -1.4 776,061 - -1.6 776,112 + +0.1 776,112 + -2.9 776,112 + -1.1 776,113 - -0.4 776,113 - +0.2 776,113 - -0.8 776,113 - -0.4 776,113 - -1.1 776,113 - -0.9 776,117 - +0.3 776,117 - -0.7 776,117 - +0.8 776,117 - +1.3 776,147 + -2.6 776,147 + +8.2 776,147 + -1.0 776,147 + -2.4 776,148 - -1.4 776,148 - +0.3 776,148 - +0.1 776,159 - -2.4 776,220 + +0.7 776,279 + -2.5 776,279 + -2.2 776,279 + -1.7 776,279 + -2.4 776,331 + OLJFJH_04085 0.12 -2.1 776,352 + OLJFJH_04085 0.14 -1.9 776,353 - OLJFJH_04085 0.14 +1.7 776,353 - OLJFJH_04085 0.14 -0.7 776,353 - OLJFJH_04085 0.14 -3.0 776,353 - OLJFJH_04085 0.14 +0.3 776,383 - OLJFJH_04085 0.17 -0.9 776,483 - OLJFJH_04085 0.28 -0.8 776,483 - OLJFJH_04085 0.28 -0.7 776,832 - OLJFJH_04085 0.64 -1.6 776,941 + OLJFJH_04085 0.75 -2.0 777,064 + OLJFJH_04085 0.88 -0.9 777,065 - OLJFJH_04085 0.88 -2.2 777,065 - OLJFJH_04085 0.88 -0.9 777,065 - OLJFJH_04085 0.88 -1.9 777,106 + -1.6 777,107 - -2.3 777,146 + -0.5 777,178 - -1.8 777,178 - -1.3 777,218 - -0.2 777,228 + -1.3 777,228 + -2.0 777,228 + -1.4 777,228 + -1.6 777,229 - -0.3 777,229 - -0.4 777,229 - -2.1 777,266 - +0.3
Or see this region's nucleotide sequence