Strain Fitness in Erwinia amylovora T8 around OLJFJH_02645

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02640 and OLJFJH_02645 are separated by 56 nucleotidesOLJFJH_02645 and OLJFJH_02650 are separated by 115 nucleotides OLJFJH_02640: OLJFJH_02640 - site-specific integrase, at 478,650 to 479,663 _02640 OLJFJH_02645: OLJFJH_02645 - TraI domain-containing protein, at 479,720 to 481,369 _02645 OLJFJH_02650: OLJFJH_02650 - UvrD-helicase domain-containing protein, at 481,485 to 482,936 _02650 Position (kb) 479 480 481 482Strain fitness (log2 ratio) -2 -1 0 1 2 3at 478.742 kb on + strandat 478.744 kb on + strandat 478.744 kb on + strandat 478.745 kb on - strandat 478.788 kb on + strand, within OLJFJH_02640at 478.789 kb on - strand, within OLJFJH_02640at 478.789 kb on - strand, within OLJFJH_02640at 478.789 kb on - strand, within OLJFJH_02640at 478.789 kb on - strand, within OLJFJH_02640at 478.797 kb on + strand, within OLJFJH_02640at 478.797 kb on + strand, within OLJFJH_02640at 478.797 kb on + strand, within OLJFJH_02640at 478.797 kb on + strand, within OLJFJH_02640at 478.797 kb on + strand, within OLJFJH_02640at 478.798 kb on - strand, within OLJFJH_02640at 478.798 kb on - strand, within OLJFJH_02640at 478.798 kb on - strand, within OLJFJH_02640at 478.820 kb on + strand, within OLJFJH_02640at 478.820 kb on + strand, within OLJFJH_02640at 478.821 kb on - strand, within OLJFJH_02640at 478.821 kb on - strand, within OLJFJH_02640at 478.824 kb on + strand, within OLJFJH_02640at 478.825 kb on - strand, within OLJFJH_02640at 478.825 kb on - strand, within OLJFJH_02640at 478.935 kb on + strand, within OLJFJH_02640at 478.935 kb on + strand, within OLJFJH_02640at 478.936 kb on - strand, within OLJFJH_02640at 478.936 kb on - strand, within OLJFJH_02640at 478.936 kb on - strand, within OLJFJH_02640at 478.936 kb on - strand, within OLJFJH_02640at 479.056 kb on - strand, within OLJFJH_02640at 479.088 kb on - strand, within OLJFJH_02640at 479.131 kb on - strand, within OLJFJH_02640at 479.131 kb on - strand, within OLJFJH_02640at 479.132 kb on + strand, within OLJFJH_02640at 479.144 kb on + strand, within OLJFJH_02640at 479.179 kb on + strand, within OLJFJH_02640at 479.253 kb on - strand, within OLJFJH_02640at 479.293 kb on - strand, within OLJFJH_02640at 479.294 kb on + strand, within OLJFJH_02640at 479.294 kb on + strand, within OLJFJH_02640at 479.294 kb on + strand, within OLJFJH_02640at 479.294 kb on + strand, within OLJFJH_02640at 479.295 kb on - strand, within OLJFJH_02640at 479.302 kb on - strand, within OLJFJH_02640at 479.382 kb on + strand, within OLJFJH_02640at 479.447 kb on + strand, within OLJFJH_02640at 479.475 kb on + strand, within OLJFJH_02640at 479.476 kb on - strand, within OLJFJH_02640at 479.479 kb on + strand, within OLJFJH_02640at 479.480 kb on - strand, within OLJFJH_02640at 479.483 kb on + strand, within OLJFJH_02640at 479.585 kb on + strandat 479.693 kb on + strandat 479.836 kb on - strandat 479.850 kb on + strandat 479.851 kb on - strandat 479.879 kb on + strandat 479.879 kb on + strandat 479.880 kb on - strandat 479.880 kb on - strandat 479.906 kb on + strand, within OLJFJH_02645at 479.906 kb on + strand, within OLJFJH_02645at 479.907 kb on - strand, within OLJFJH_02645at 479.907 kb on - strand, within OLJFJH_02645at 479.907 kb on - strand, within OLJFJH_02645at 479.945 kb on - strand, within OLJFJH_02645at 480.002 kb on + strand, within OLJFJH_02645at 480.003 kb on - strand, within OLJFJH_02645at 480.003 kb on - strand, within OLJFJH_02645at 480.003 kb on - strand, within OLJFJH_02645at 480.007 kb on + strand, within OLJFJH_02645at 480.027 kb on + strand, within OLJFJH_02645at 480.028 kb on - strand, within OLJFJH_02645at 480.034 kb on + strand, within OLJFJH_02645at 480.187 kb on + strand, within OLJFJH_02645at 480.232 kb on + strand, within OLJFJH_02645at 480.232 kb on + strand, within OLJFJH_02645at 480.312 kb on - strand, within OLJFJH_02645at 480.395 kb on + strand, within OLJFJH_02645at 480.396 kb on - strand, within OLJFJH_02645at 480.428 kb on + strand, within OLJFJH_02645at 480.548 kb on + strand, within OLJFJH_02645at 480.549 kb on - strand, within OLJFJH_02645at 480.616 kb on + strand, within OLJFJH_02645at 480.619 kb on + strand, within OLJFJH_02645at 480.619 kb on + strand, within OLJFJH_02645at 480.620 kb on - strand, within OLJFJH_02645at 480.620 kb on - strand, within OLJFJH_02645at 480.620 kb on - strand, within OLJFJH_02645at 480.620 kb on - strand, within OLJFJH_02645at 480.629 kb on + strand, within OLJFJH_02645at 480.629 kb on + strand, within OLJFJH_02645at 480.629 kb on + strand, within OLJFJH_02645at 480.629 kb on + strand, within OLJFJH_02645at 480.630 kb on - strand, within OLJFJH_02645at 480.653 kb on - strand, within OLJFJH_02645at 480.653 kb on - strand, within OLJFJH_02645at 480.683 kb on + strand, within OLJFJH_02645at 480.683 kb on + strand, within OLJFJH_02645at 480.686 kb on - strand, within OLJFJH_02645at 480.686 kb on - strand, within OLJFJH_02645at 480.773 kb on + strand, within OLJFJH_02645at 480.833 kb on + strand, within OLJFJH_02645at 480.941 kb on - strand, within OLJFJH_02645at 480.941 kb on - strand, within OLJFJH_02645at 480.941 kb on - strand, within OLJFJH_02645at 480.968 kb on - strand, within OLJFJH_02645at 480.994 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.030 kb on + strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.031 kb on - strand, within OLJFJH_02645at 481.032 kb on + strand, within OLJFJH_02645at 481.032 kb on + strand, within OLJFJH_02645at 481.033 kb on - strand, within OLJFJH_02645at 481.091 kb on - strand, within OLJFJH_02645at 481.098 kb on + strand, within OLJFJH_02645at 481.098 kb on + strand, within OLJFJH_02645at 481.098 kb on + strand, within OLJFJH_02645at 481.243 kb on + strandat 481.281 kb on + strandat 481.307 kb on - strandat 481.348 kb on + strandat 481.355 kb on + strandat 481.356 kb on - strandat 481.406 kb on - strandat 481.421 kb on - strandat 481.701 kb on - strand, within OLJFJH_02650at 481.701 kb on - strand, within OLJFJH_02650at 481.719 kb on + strand, within OLJFJH_02650at 481.724 kb on + strand, within OLJFJH_02650at 481.745 kb on + strand, within OLJFJH_02650at 481.795 kb on + strand, within OLJFJH_02650at 481.907 kb on + strand, within OLJFJH_02650at 481.908 kb on - strand, within OLJFJH_02650at 481.908 kb on - strand, within OLJFJH_02650at 481.939 kb on - strand, within OLJFJH_02650at 482.031 kb on + strand, within OLJFJH_02650at 482.032 kb on - strand, within OLJFJH_02650at 482.062 kb on + strand, within OLJFJH_02650at 482.063 kb on - strand, within OLJFJH_02650

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-2
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478,742 + -0.5
478,744 + +0.9
478,744 + -0.8
478,745 - -0.4
478,788 + OLJFJH_02640 0.14 -0.2
478,789 - OLJFJH_02640 0.14 -0.1
478,789 - OLJFJH_02640 0.14 -0.3
478,789 - OLJFJH_02640 0.14 -1.2
478,789 - OLJFJH_02640 0.14 -2.6
478,797 + OLJFJH_02640 0.14 +0.4
478,797 + OLJFJH_02640 0.14 -0.9
478,797 + OLJFJH_02640 0.14 -0.1
478,797 + OLJFJH_02640 0.14 -0.1
478,797 + OLJFJH_02640 0.14 -0.0
478,798 - OLJFJH_02640 0.15 +1.3
478,798 - OLJFJH_02640 0.15 +0.7
478,798 - OLJFJH_02640 0.15 +0.1
478,820 + OLJFJH_02640 0.17 -0.1
478,820 + OLJFJH_02640 0.17 +0.8
478,821 - OLJFJH_02640 0.17 +0.6
478,821 - OLJFJH_02640 0.17 -0.3
478,824 + OLJFJH_02640 0.17 -0.6
478,825 - OLJFJH_02640 0.17 -0.0
478,825 - OLJFJH_02640 0.17 -0.1
478,935 + OLJFJH_02640 0.28 -0.4
478,935 + OLJFJH_02640 0.28 -1.1
478,936 - OLJFJH_02640 0.28 -0.2
478,936 - OLJFJH_02640 0.28 -0.9
478,936 - OLJFJH_02640 0.28 +0.1
478,936 - OLJFJH_02640 0.28 -0.5
479,056 - OLJFJH_02640 0.40 -0.2
479,088 - OLJFJH_02640 0.43 -0.1
479,131 - OLJFJH_02640 0.47 -2.7
479,131 - OLJFJH_02640 0.47 +0.6
479,132 + OLJFJH_02640 0.48 -0.3
479,144 + OLJFJH_02640 0.49 -0.0
479,179 + OLJFJH_02640 0.52 -0.2
479,253 - OLJFJH_02640 0.59 -0.2
479,293 - OLJFJH_02640 0.63 +0.4
479,294 + OLJFJH_02640 0.64 -0.3
479,294 + OLJFJH_02640 0.64 -0.8
479,294 + OLJFJH_02640 0.64 -0.9
479,294 + OLJFJH_02640 0.64 +0.3
479,295 - OLJFJH_02640 0.64 -0.2
479,302 - OLJFJH_02640 0.64 +0.1
479,382 + OLJFJH_02640 0.72 +0.0
479,447 + OLJFJH_02640 0.79 -0.2
479,475 + OLJFJH_02640 0.81 -0.1
479,476 - OLJFJH_02640 0.81 +0.8
479,479 + OLJFJH_02640 0.82 -0.1
479,480 - OLJFJH_02640 0.82 +0.6
479,483 + OLJFJH_02640 0.82 -1.3
479,585 + +0.7
479,693 + -0.4
479,836 - -0.8
479,850 + -0.6
479,851 - -0.3
479,879 + -0.6
479,879 + -1.1
479,880 - -0.5
479,880 - -0.4
479,906 + OLJFJH_02645 0.11 -1.1
479,906 + OLJFJH_02645 0.11 +2.8
479,907 - OLJFJH_02645 0.11 -0.7
479,907 - OLJFJH_02645 0.11 -1.4
479,907 - OLJFJH_02645 0.11 -0.3
479,945 - OLJFJH_02645 0.14 -0.7
480,002 + OLJFJH_02645 0.17 -0.6
480,003 - OLJFJH_02645 0.17 +0.4
480,003 - OLJFJH_02645 0.17 +0.3
480,003 - OLJFJH_02645 0.17 -0.2
480,007 + OLJFJH_02645 0.17 +0.8
480,027 + OLJFJH_02645 0.19 +0.3
480,028 - OLJFJH_02645 0.19 -1.5
480,034 + OLJFJH_02645 0.19 -0.1
480,187 + OLJFJH_02645 0.28 -2.0
480,232 + OLJFJH_02645 0.31 -0.8
480,232 + OLJFJH_02645 0.31 -1.0
480,312 - OLJFJH_02645 0.36 -1.4
480,395 + OLJFJH_02645 0.41 -0.5
480,396 - OLJFJH_02645 0.41 -0.7
480,428 + OLJFJH_02645 0.43 -1.2
480,548 + OLJFJH_02645 0.50 -0.1
480,549 - OLJFJH_02645 0.50 -0.4
480,616 + OLJFJH_02645 0.54 +1.3
480,619 + OLJFJH_02645 0.54 -0.4
480,619 + OLJFJH_02645 0.54 -0.5
480,620 - OLJFJH_02645 0.55 -0.0
480,620 - OLJFJH_02645 0.55 -0.2
480,620 - OLJFJH_02645 0.55 -0.8
480,620 - OLJFJH_02645 0.55 -0.2
480,629 + OLJFJH_02645 0.55 -0.4
480,629 + OLJFJH_02645 0.55 -0.1
480,629 + OLJFJH_02645 0.55 +0.3
480,629 + OLJFJH_02645 0.55 +0.8
480,630 - OLJFJH_02645 0.55 -0.1
480,653 - OLJFJH_02645 0.57 -1.1
480,653 - OLJFJH_02645 0.57 -0.6
480,683 + OLJFJH_02645 0.58 -0.8
480,683 + OLJFJH_02645 0.58 -2.2
480,686 - OLJFJH_02645 0.59 -1.1
480,686 - OLJFJH_02645 0.59 +0.0
480,773 + OLJFJH_02645 0.64 -1.0
480,833 + OLJFJH_02645 0.67 -0.3
480,941 - OLJFJH_02645 0.74 -0.2
480,941 - OLJFJH_02645 0.74 -0.8
480,941 - OLJFJH_02645 0.74 -0.3
480,968 - OLJFJH_02645 0.76 -0.2
480,994 + OLJFJH_02645 0.77 -0.1
481,030 + OLJFJH_02645 0.79 -0.8
481,030 + OLJFJH_02645 0.79 +0.2
481,030 + OLJFJH_02645 0.79 +1.5
481,030 + OLJFJH_02645 0.79 -0.9
481,030 + OLJFJH_02645 0.79 -0.3
481,030 + OLJFJH_02645 0.79 +1.5
481,030 + OLJFJH_02645 0.79 +1.4
481,030 + OLJFJH_02645 0.79 +0.6
481,030 + OLJFJH_02645 0.79 -0.4
481,030 + OLJFJH_02645 0.79 -0.3
481,031 - OLJFJH_02645 0.79 -0.1
481,031 - OLJFJH_02645 0.79 -0.1
481,031 - OLJFJH_02645 0.79 -0.7
481,031 - OLJFJH_02645 0.79 +0.5
481,031 - OLJFJH_02645 0.79 +0.0
481,031 - OLJFJH_02645 0.79 -0.4
481,031 - OLJFJH_02645 0.79 -1.4
481,031 - OLJFJH_02645 0.79 +0.1
481,031 - OLJFJH_02645 0.79 +0.8
481,031 - OLJFJH_02645 0.79 -0.8
481,031 - OLJFJH_02645 0.79 -0.2
481,032 + OLJFJH_02645 0.80 +1.1
481,032 + OLJFJH_02645 0.80 +1.1
481,033 - OLJFJH_02645 0.80 +0.9
481,091 - OLJFJH_02645 0.83 +0.2
481,098 + OLJFJH_02645 0.84 +0.3
481,098 + OLJFJH_02645 0.84 +0.5
481,098 + OLJFJH_02645 0.84 -0.8
481,243 + -0.2
481,281 + -0.2
481,307 - +1.5
481,348 + +1.4
481,355 + -0.4
481,356 - -0.5
481,406 - -0.3
481,421 - +0.6
481,701 - OLJFJH_02650 0.15 -0.6
481,701 - OLJFJH_02650 0.15 -1.1
481,719 + OLJFJH_02650 0.16 +0.7
481,724 + OLJFJH_02650 0.16 -0.4
481,745 + OLJFJH_02650 0.18 -0.4
481,795 + OLJFJH_02650 0.21 +0.3
481,907 + OLJFJH_02650 0.29 -0.6
481,908 - OLJFJH_02650 0.29 -0.7
481,908 - OLJFJH_02650 0.29 +0.3
481,939 - OLJFJH_02650 0.31 +0.8
482,031 + OLJFJH_02650 0.38 -2.1
482,032 - OLJFJH_02650 0.38 +0.7
482,062 + OLJFJH_02650 0.40 +0.1
482,063 - OLJFJH_02650 0.40 -0.9

Or see this region's nucleotide sequence