Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23705

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,534,358	+	mdoH	HEPCGN_23695	0.69	+0.4
3,534,384	-	mdoH	HEPCGN_23695	0.70	-0.2
3,534,404	-	mdoH	HEPCGN_23695	0.71	-0.5
3,534,470	-	mdoH	HEPCGN_23695	0.73	-1.4
3,535,079	+				-0.0
3,535,145	-				+0.8
3,535,305	+				+0.0
3,535,319	-				-2.4
3,535,367	+	yceK	HEPCGN_23705	0.25	+0.7
3,535,367	+	yceK	HEPCGN_23705	0.25	-2.5
3,535,379	+	yceK	HEPCGN_23705	0.30	+0.1
3,535,380	-	yceK	HEPCGN_23705	0.30	+0.3
3,535,408	-	yceK	HEPCGN_23705	0.43	+1.8
3,535,493	+	yceK	HEPCGN_23705	0.80	-1.3
3,535,498	+	yceK	HEPCGN_23705	0.82	+0.7
3,535,499	-	yceK	HEPCGN_23705	0.82	+1.4
3,535,536	+				+0.8
3,535,635	-	msyB	HEPCGN_23710	0.26	-0.5
3,535,666	-	msyB	HEPCGN_23710	0.34	-0.1
3,535,712	+	msyB	HEPCGN_23710	0.46	-0.3
3,535,718	+	msyB	HEPCGN_23710	0.48	+1.0
3,535,722	+	msyB	HEPCGN_23710	0.49	+0.6
3,535,904	-				+0.4
3,535,904	-				+0.8
3,535,904	-				+0.7
3,535,981	-				-1.0
3,536,030	-				-0.4
3,536,086	+				+1.8
3,536,102	+				+0.5
3,536,170	-	mdtG	HEPCGN_23715	0.14	-0.0
3,536,171	+	mdtG	HEPCGN_23715	0.14	-0.2
3,536,171	+	mdtG	HEPCGN_23715	0.14	-0.1
3,536,182	-	mdtG	HEPCGN_23715	0.15	+0.9
3,536,210	+	mdtG	HEPCGN_23715	0.17	+0.0
3,536,211	-	mdtG	HEPCGN_23715	0.18	-0.4
3,536,211	-	mdtG	HEPCGN_23715	0.18	+0.7
3,536,215	+	mdtG	HEPCGN_23715	0.18	+0.9
3,536,216	-	mdtG	HEPCGN_23715	0.18	+0.2
3,536,216	-	mdtG	HEPCGN_23715	0.18	-0.1
3,536,216	-	mdtG	HEPCGN_23715	0.18	+0.6
3,536,216	-	mdtG	HEPCGN_23715	0.18	-0.5
3,536,218	+	mdtG	HEPCGN_23715	0.18	+0.3
3,536,218	+	mdtG	HEPCGN_23715	0.18	-0.6
3,536,239	+	mdtG	HEPCGN_23715	0.20	+0.1
3,536,240	-	mdtG	HEPCGN_23715	0.20	-0.1
3,536,287	+	mdtG	HEPCGN_23715	0.24	+0.3
3,536,288	-	mdtG	HEPCGN_23715	0.24	-0.7
3,536,304	-	mdtG	HEPCGN_23715	0.25	-0.1
3,536,404	+	mdtG	HEPCGN_23715	0.33	+1.0
3,536,405	-	mdtG	HEPCGN_23715	0.33	+0.0
3,536,489	+	mdtG	HEPCGN_23715	0.40	+0.2
3,536,490	-	mdtG	HEPCGN_23715	0.40	-0.2
3,536,536	+	mdtG	HEPCGN_23715	0.44	+0.7