Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15765

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,917,546	-	glpG	HEPCGN_15755	0.74	-0.9
1,917,546	-	glpG	HEPCGN_15755	0.74	-0.5
1,917,546	-	glpG	HEPCGN_15755	0.74	-0.1
1,917,602	+	glpG	HEPCGN_15755	0.80	+0.8
1,917,619	-	glpG	HEPCGN_15755	0.82	-1.2
1,917,622	+	glpG	HEPCGN_15755	0.83	+0.7
1,917,622	+	glpG	HEPCGN_15755	0.83	-0.0
1,917,623	-	glpG	HEPCGN_15755	0.83	-1.3
1,917,718	-				+0.1
1,917,761	+				+0.3
1,917,775	+				+0.0
1,917,806	+				-0.1
1,917,806	+				+0.1
1,917,807	-				+0.2
1,917,822	-				+0.5
1,917,834	+				-0.2
1,917,834	+				-1.0
1,917,835	-				-0.9
1,917,835	-				-0.5
1,917,835	-				-1.0
1,917,835	-				-0.9
1,917,884	+	glpR	HEPCGN_15760	0.14	-0.8
1,918,158	-	glpR	HEPCGN_15760	0.50	+0.5
1,918,256	+	glpR	HEPCGN_15760	0.63	-0.4
1,918,434	-	glpR	HEPCGN_15760	0.86	-0.9
1,918,453	+	glpR	HEPCGN_15760	0.89	-0.7
1,918,453	+	glpR	HEPCGN_15760	0.89	-1.0
1,918,453	+	glpR	HEPCGN_15760	0.89	-0.5
1,918,453	+	glpR	HEPCGN_15760	0.89	-1.4
1,918,453	+	glpR	HEPCGN_15760	0.89	-0.9
1,918,454	-	glpR	HEPCGN_15760	0.89	-0.3
1,918,517	+				-0.5
1,918,517	+				-1.0
1,918,578	+				+0.6
1,918,579	-				+0.3
1,918,579	-				+0.2
1,918,754	-	rtcR	HEPCGN_15765	0.15	-1.7
1,918,783	+	rtcR	HEPCGN_15765	0.16	+2.5
1,918,784	-	rtcR	HEPCGN_15765	0.17	-0.4
1,918,785	+	rtcR	HEPCGN_15765	0.17	+0.6
1,918,786	-	rtcR	HEPCGN_15765	0.17	+0.1
1,918,951	+	rtcR	HEPCGN_15765	0.27	+1.0
1,918,952	-	rtcR	HEPCGN_15765	0.27	-0.6
1,918,999	-	rtcR	HEPCGN_15765	0.30	+0.4
1,918,999	-	rtcR	HEPCGN_15765	0.30	+0.4
1,919,077	-	rtcR	HEPCGN_15765	0.35	-0.9
1,919,141	-	rtcR	HEPCGN_15765	0.39	+0.3
1,919,262	-	rtcR	HEPCGN_15765	0.46	+0.1
1,919,427	-	rtcR	HEPCGN_15765	0.57	-0.2
1,919,626	+	rtcR	HEPCGN_15765	0.69	-1.0
1,919,651	-	rtcR	HEPCGN_15765	0.71	+0.6
1,919,708	+	rtcR	HEPCGN_15765	0.74	+0.5
1,919,709	-	rtcR	HEPCGN_15765	0.74	+2.9
1,919,723	+	rtcR	HEPCGN_15765	0.75	-0.2
1,919,723	+	rtcR	HEPCGN_15765	0.75	+0.1
1,919,727	+	rtcR	HEPCGN_15765	0.75	+0.3
1,919,793	-	rtcR	HEPCGN_15765	0.80	+0.3
1,919,796	+	rtcR	HEPCGN_15765	0.80	+0.4
1,919,889	-	rtcR	HEPCGN_15765	0.86	-0.4
1,919,889	-	rtcR	HEPCGN_15765	0.86	+0.9
1,920,003	-				-0.2
1,920,021	-				-0.6
1,920,072	+				+0.2
1,920,112	+				+0.3
1,920,113	-				-0.3
1,920,121	+				-0.2
1,920,121	+				+0.5
1,920,122	-				+0.7
1,920,132	-				-1.4
1,920,272	-				+0.2
1,920,399	+				+0.2
1,920,400	-				-0.2
1,920,432	+	rtcB	HEPCGN_15770	0.10	-0.3
1,920,452	+	rtcB	HEPCGN_15770	0.12	-0.0
1,920,452	+	rtcB	HEPCGN_15770	0.12	+0.2
1,920,452	+	rtcB	HEPCGN_15770	0.12	-0.6
1,920,452	+	rtcB	HEPCGN_15770	0.12	+0.2
1,920,452	+	rtcB	HEPCGN_15770	0.12	-0.9
1,920,452	+	rtcB	HEPCGN_15770	0.12	+1.1
1,920,453	-	rtcB	HEPCGN_15770	0.12	-0.7
1,920,453	-	rtcB	HEPCGN_15770	0.12	+0.5
1,920,453	-	rtcB	HEPCGN_15770	0.12	-0.2
1,920,654	+	rtcB	HEPCGN_15770	0.28	+0.8
1,920,654	+	rtcB	HEPCGN_15770	0.28	-0.0
1,920,664	-	rtcB	HEPCGN_15770	0.29	+0.2
1,920,765	+	rtcB	HEPCGN_15770	0.37	-0.2
1,920,766	-	rtcB	HEPCGN_15770	0.37	-0.2
1,920,771	+	rtcB	HEPCGN_15770	0.38	-0.1
1,920,772	-	rtcB	HEPCGN_15770	0.38	-0.8
1,920,775	+	rtcB	HEPCGN_15770	0.38	-0.3
1,920,775	+	rtcB	HEPCGN_15770	0.38	-0.2
1,920,776	-	rtcB	HEPCGN_15770	0.38	-0.4
1,920,776	-	rtcB	HEPCGN_15770	0.38	-0.7
1,920,776	-	rtcB	HEPCGN_15770	0.38	+0.2
1,920,776	-	rtcB	HEPCGN_15770	0.38	-1.0
1,920,776	-	rtcB	HEPCGN_15770	0.38	-0.2
1,920,776	-	rtcB	HEPCGN_15770	0.38	+0.2
1,920,776	-	rtcB	HEPCGN_15770	0.38	-0.6
1,920,777	+	rtcB	HEPCGN_15770	0.38	+0.3
1,920,852	+	rtcB	HEPCGN_15770	0.44	+0.3
1,920,882	+	rtcB	HEPCGN_15770	0.47	-0.5
1,920,883	-	rtcB	HEPCGN_15770	0.47	-0.3
1,920,898	+	rtcB	HEPCGN_15770	0.48	-0.4
1,920,899	-	rtcB	HEPCGN_15770	0.48	+2.8
1,920,899	-	rtcB	HEPCGN_15770	0.48	+1.8