Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybbP and ybbA overlap by 4 nucleotides ybbA and tesA are separated by 49 nucleotides tesA and ybbO are separated by 28 nucleotides ybbO and cnoX are separated by 60 nucleotides
HEPCGN_06595: ybbP - Uncharacterized ABC transporter permease YbbP, at 34,907 to 37,321
ybbP
HEPCGN_06600: ybbA - ABC transporter ATP-binding protein, at 37,318 to 38,004
ybbA
HEPCGN_06605: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 38,054 to 38,590
tesA
HEPCGN_06610: ybbO - NADP(+)-dependent aldehyde reductase, at 38,619 to 39,389
ybbO
HEPCGN_06615: cnoX - chaperedoxin, at 39,450 to 40,304
cnoX
Position (kb) 38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.193 kb on + strand at 37.194 kb on - strand at 37.194 kb on - strand at 37.274 kb on + strand at 37.274 kb on + strand at 37.274 kb on + strand at 37.603 kb on + strand, within ybbA at 37.603 kb on + strand, within ybbA at 37.736 kb on - strand, within ybbA at 37.776 kb on + strand, within ybbA at 37.779 kb on + strand, within ybbA at 37.780 kb on - strand, within ybbA at 37.780 kb on - strand, within ybbA at 37.780 kb on - strand, within ybbA at 37.783 kb on + strand, within ybbA at 37.784 kb on - strand, within ybbA at 37.969 kb on - strand at 38.128 kb on + strand, within tesA at 38.128 kb on + strand, within tesA at 38.129 kb on - strand, within tesA at 38.141 kb on - strand, within tesA at 38.244 kb on + strand, within tesA at 38.361 kb on + strand, within tesA at 38.362 kb on - strand, within tesA at 38.392 kb on + strand, within tesA at 38.393 kb on - strand, within tesA at 38.393 kb on - strand, within tesA at 38.393 kb on - strand, within tesA at 38.475 kb on - strand, within tesA at 38.536 kb on + strand, within tesA at 38.575 kb on - strand at 38.612 kb on + strand at 38.635 kb on + strand at 38.635 kb on + strand at 38.636 kb on - strand at 38.856 kb on - strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.877 kb on + strand, within ybbO at 38.878 kb on - strand, within ybbO at 38.878 kb on - strand, within ybbO at 38.878 kb on - strand, within ybbO at 38.878 kb on - strand, within ybbO at 39.000 kb on - strand, within ybbO at 39.066 kb on - strand, within ybbO at 39.109 kb on + strand, within ybbO at 39.110 kb on - strand, within ybbO at 39.110 kb on - strand, within ybbO at 39.125 kb on + strand, within ybbO at 39.158 kb on + strand, within ybbO at 39.197 kb on + strand, within ybbO at 39.198 kb on - strand, within ybbO at 39.278 kb on + strand, within ybbO at 39.341 kb on + strand at 39.572 kb on - strand, within cnoX
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 37,193 + +0.2 37,194 - -0.3 37,194 - -0.5 37,274 + +1.4 37,274 + +0.5 37,274 + -0.2 37,603 + ybbA HEPCGN_06600 0.41 +1.4 37,603 + ybbA HEPCGN_06600 0.41 +1.4 37,736 - ybbA HEPCGN_06600 0.61 -0.4 37,776 + ybbA HEPCGN_06600 0.67 -0.5 37,779 + ybbA HEPCGN_06600 0.67 +0.2 37,780 - ybbA HEPCGN_06600 0.67 +0.1 37,780 - ybbA HEPCGN_06600 0.67 -1.0 37,780 - ybbA HEPCGN_06600 0.67 +0.6 37,783 + ybbA HEPCGN_06600 0.68 +0.8 37,784 - ybbA HEPCGN_06600 0.68 -1.4 37,969 - +0.5 38,128 + tesA HEPCGN_06605 0.14 -2.4 38,128 + tesA HEPCGN_06605 0.14 +1.5 38,129 - tesA HEPCGN_06605 0.14 +0.0 38,141 - tesA HEPCGN_06605 0.16 -0.1 38,244 + tesA HEPCGN_06605 0.35 +0.8 38,361 + tesA HEPCGN_06605 0.57 +0.5 38,362 - tesA HEPCGN_06605 0.57 +0.3 38,392 + tesA HEPCGN_06605 0.63 +0.5 38,393 - tesA HEPCGN_06605 0.63 -0.1 38,393 - tesA HEPCGN_06605 0.63 -0.4 38,393 - tesA HEPCGN_06605 0.63 +0.4 38,475 - tesA HEPCGN_06605 0.78 -0.2 38,536 + tesA HEPCGN_06605 0.90 +0.2 38,575 - +0.4 38,612 + +0.5 38,635 + +0.6 38,635 + +0.7 38,636 - +0.2 38,856 - ybbO HEPCGN_06610 0.31 +1.0 38,877 + ybbO HEPCGN_06610 0.33 +1.2 38,877 + ybbO HEPCGN_06610 0.33 +0.0 38,877 + ybbO HEPCGN_06610 0.33 +0.1 38,877 + ybbO HEPCGN_06610 0.33 +0.2 38,877 + ybbO HEPCGN_06610 0.33 +0.3 38,878 - ybbO HEPCGN_06610 0.34 +0.1 38,878 - ybbO HEPCGN_06610 0.34 -0.6 38,878 - ybbO HEPCGN_06610 0.34 +0.7 38,878 - ybbO HEPCGN_06610 0.34 +1.6 39,000 - ybbO HEPCGN_06610 0.49 +0.2 39,066 - ybbO HEPCGN_06610 0.58 +0.4 39,109 + ybbO HEPCGN_06610 0.64 +2.2 39,110 - ybbO HEPCGN_06610 0.64 -0.6 39,110 - ybbO HEPCGN_06610 0.64 -0.3 39,125 + ybbO HEPCGN_06610 0.66 +0.2 39,158 + ybbO HEPCGN_06610 0.70 -0.2 39,197 + ybbO HEPCGN_06610 0.75 +0.2 39,198 - ybbO HEPCGN_06610 0.75 +1.2 39,278 + ybbO HEPCGN_06610 0.85 +0.2 39,341 + -0.5 39,572 - cnoX HEPCGN_06615 0.14 +0.8
Or see this region's nucleotide sequence