Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05940

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,057,953	-	rsxC	HEPCGN_05930	0.81	+1.1
1,057,969	-	rsxC	HEPCGN_05930	0.82	+0.4
1,058,045	+	rsxC	HEPCGN_05930	0.85	-1.3
1,058,084	+	rsxC	HEPCGN_05930	0.87	-1.1
1,058,085	-	rsxC	HEPCGN_05930	0.87	+0.7
1,058,239	-				-1.4
1,058,361	+				-0.0
1,058,366	+				-0.1
1,058,367	-				-0.5
1,058,488	+	rsxB	HEPCGN_05935	0.21	+0.4
1,058,489	-	rsxB	HEPCGN_05935	0.21	-0.6
1,058,523	+	rsxB	HEPCGN_05935	0.27	-1.7
1,058,524	-	rsxB	HEPCGN_05935	0.27	+0.2
1,058,575	-	rsxB	HEPCGN_05935	0.36	-0.9
1,058,581	-	rsxB	HEPCGN_05935	0.37	-0.7
1,058,593	-	rsxB	HEPCGN_05935	0.39	-0.0
1,058,676	+	rsxB	HEPCGN_05935	0.54	-1.5
1,058,944	+				-0.5
1,058,963	+				+1.4
1,058,972	+				+1.6
1,058,988	-				-0.1
1,058,988	-				-0.2
1,059,197	+	rsxA	HEPCGN_05940	0.44	+0.3
1,059,366	-	rsxA	HEPCGN_05940	0.73	-0.1
1,059,480	-				-0.2
1,059,553	-				-1.0
1,059,587	+				+1.0
1,059,588	-				-0.2
1,059,594	-				-1.3
1,059,603	-				+0.1
1,059,678	+	ydgK	HEPCGN_05945	0.17	+0.0
1,059,768	+	ydgK	HEPCGN_05945	0.38	-2.3
1,059,769	-	ydgK	HEPCGN_05945	0.38	-1.3
1,059,769	-	ydgK	HEPCGN_05945	0.38	-0.4
1,059,769	-	ydgK	HEPCGN_05945	0.38	-0.5
1,059,771	+	ydgK	HEPCGN_05945	0.39	+0.1
1,059,773	+	ydgK	HEPCGN_05945	0.39	-0.5
1,059,774	-	ydgK	HEPCGN_05945	0.39	+0.2
1,059,963	+	ydgK	HEPCGN_05945	0.82	+0.8
1,059,968	-	ydgK	HEPCGN_05945	0.83	+1.2
1,060,041	+				-0.5
1,060,042	-				-0.2
1,060,084	-				+0.3
1,060,095	+				+0.2
1,060,095	+				-0.7
1,060,097	+				+0.8
1,060,106	+				+0.4
1,060,107	-				-0.8
1,060,225	-	ydgT	HEPCGN_05950	0.45	+0.3
1,060,229	-	ydgT	HEPCGN_05950	0.47	-0.7
1,060,342	+				-2.0