Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04575

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheB and cheY are separated by 14 nucleotidescheY and cheZ are separated by 10 nucleotidescheZ and flhB are separated by 208 nucleotides HEPCGN_04570: cheB - protein-glutamate methylesterase/protein glutamine deamidase, at 795,288 to 796,337 cheB HEPCGN_04575: cheY - chemotaxis regulatory protein CheY, at 796,352 to 796,741 cheY HEPCGN_04580: cheZ - protein phosphatase CheZ, at 796,752 to 797,396 cheZ HEPCGN_04585: flhB - flagellar biosynthesis protein FlhB, at 797,605 to 798,753 flhB Position (kb) 796 797Strain fitness (log2 ratio) -3 -2 -1 0 1at 795.701 kb on + strand, within cheBat 795.701 kb on + strand, within cheBat 795.808 kb on + strand, within cheBat 795.844 kb on + strand, within cheBat 795.857 kb on + strand, within cheBat 795.858 kb on - strand, within cheBat 795.900 kb on - strand, within cheBat 795.964 kb on - strand, within cheBat 795.964 kb on - strand, within cheBat 795.964 kb on - strand, within cheBat 795.964 kb on - strand, within cheBat 795.964 kb on - strand, within cheBat 796.002 kb on - strand, within cheBat 796.015 kb on - strand, within cheBat 796.483 kb on + strand, within cheYat 796.602 kb on + strand, within cheYat 796.603 kb on - strand, within cheYat 796.603 kb on - strand, within cheYat 796.667 kb on + strand, within cheYat 796.917 kb on + strand, within cheZat 796.918 kb on - strand, within cheZat 796.918 kb on - strand, within cheZat 796.918 kb on - strand, within cheZat 796.918 kb on - strand, within cheZat 796.920 kb on + strand, within cheZat 796.920 kb on + strand, within cheZat 796.921 kb on - strand, within cheZat 797.132 kb on + strand, within cheZat 797.133 kb on - strand, within cheZat 797.133 kb on - strand, within cheZat 797.401 kb on + strandat 797.514 kb on - strandat 797.574 kb on + strandat 797.575 kb on - strandat 797.581 kb on - strandat 797.584 kb on - strandat 797.584 kb on - strandat 797.737 kb on - strand, within flhB

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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795,701 + cheB HEPCGN_04570 0.39 +0.2
795,701 + cheB HEPCGN_04570 0.39 +0.4
795,808 + cheB HEPCGN_04570 0.50 -0.2
795,844 + cheB HEPCGN_04570 0.53 -0.6
795,857 + cheB HEPCGN_04570 0.54 +0.7
795,858 - cheB HEPCGN_04570 0.54 +0.1
795,900 - cheB HEPCGN_04570 0.58 -0.5
795,964 - cheB HEPCGN_04570 0.64 -0.6
795,964 - cheB HEPCGN_04570 0.64 -0.4
795,964 - cheB HEPCGN_04570 0.64 +0.4
795,964 - cheB HEPCGN_04570 0.64 +0.7
795,964 - cheB HEPCGN_04570 0.64 +0.1
796,002 - cheB HEPCGN_04570 0.68 +0.2
796,015 - cheB HEPCGN_04570 0.69 -0.0
796,483 + cheY HEPCGN_04575 0.34 -3.0
796,602 + cheY HEPCGN_04575 0.64 -0.2
796,603 - cheY HEPCGN_04575 0.64 +0.6
796,603 - cheY HEPCGN_04575 0.64 +0.4
796,667 + cheY HEPCGN_04575 0.81 +0.5
796,917 + cheZ HEPCGN_04580 0.26 -0.7
796,918 - cheZ HEPCGN_04580 0.26 -0.1
796,918 - cheZ HEPCGN_04580 0.26 -1.1
796,918 - cheZ HEPCGN_04580 0.26 -3.0
796,918 - cheZ HEPCGN_04580 0.26 -0.5
796,920 + cheZ HEPCGN_04580 0.26 -0.4
796,920 + cheZ HEPCGN_04580 0.26 +0.2
796,921 - cheZ HEPCGN_04580 0.26 +0.3
797,132 + cheZ HEPCGN_04580 0.59 -0.0
797,133 - cheZ HEPCGN_04580 0.59 -1.2
797,133 - cheZ HEPCGN_04580 0.59 -0.6
797,401 + +0.5
797,514 - +0.3
797,574 + -0.0
797,575 - -1.5
797,581 - -0.9
797,584 - -0.2
797,584 - +0.8
797,737 - flhB HEPCGN_04585 0.11 +0.4

Or see this region's nucleotide sequence