Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04265 and HEPCGN_04270 are separated by 3 nucleotides HEPCGN_04270 and HEPCGN_04275 overlap by 4 nucleotides HEPCGN_04275 and HEPCGN_04280 overlap by 4 nucleotides HEPCGN_04280 and HEPCGN_04285 overlap by 17 nucleotides HEPCGN_04285 and HEPCGN_04290 are separated by 23 nucleotides
HEPCGN_04265: HEPCGN_04265 - baseplate assembly protein, at 748,848 to 749,744
_04265
HEPCGN_04270: HEPCGN_04270 - baseplate assembly protein, at 749,748 to 750,098
_04270
HEPCGN_04275: HEPCGN_04275 - phage baseplate assembly protein V, at 750,095 to 750,676
_04275
HEPCGN_04280: HEPCGN_04280 - phage virion morphogenesis protein, at 750,673 to 751,317
_04280
HEPCGN_04285: HEPCGN_04285 - phage tail protein, at 751,301 to 751,768
_04285
HEPCGN_04290: HEPCGN_04290 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 751,792 to 753,672
_04290
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 749.769 kb on + strand at 749.769 kb on + strand at 750.151 kb on + strand at 750.712 kb on - strand at 750.826 kb on - strand, within HEPCGN_04280 at 750.826 kb on - strand, within HEPCGN_04280 at 750.959 kb on - strand, within HEPCGN_04280 at 751.098 kb on + strand, within HEPCGN_04280 at 751.303 kb on - strand at 751.337 kb on + strand at 751.338 kb on - strand at 751.457 kb on - strand, within HEPCGN_04285 at 751.516 kb on + strand, within HEPCGN_04285 at 751.635 kb on + strand, within HEPCGN_04285 at 751.636 kb on - strand, within HEPCGN_04285 at 751.762 kb on + strand at 751.763 kb on - strand at 751.763 kb on - strand at 751.793 kb on + strand at 751.794 kb on - strand at 751.794 kb on - strand at 751.795 kb on + strand at 751.796 kb on - strand at 751.807 kb on - strand at 751.858 kb on - strand at 752.009 kb on + strand, within HEPCGN_04290
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 749,769 + +0.8 749,769 + -0.6 750,151 + +1.2 750,712 - -1.6 750,826 - HEPCGN_04280 0.24 -1.2 750,826 - HEPCGN_04280 0.24 -1.6 750,959 - HEPCGN_04280 0.44 -1.4 751,098 + HEPCGN_04280 0.66 -0.9 751,303 - -0.5 751,337 + +0.1 751,338 - +0.3 751,457 - HEPCGN_04285 0.33 +1.1 751,516 + HEPCGN_04285 0.46 +0.2 751,635 + HEPCGN_04285 0.71 -2.1 751,636 - HEPCGN_04285 0.72 -0.1 751,762 + -3.0 751,763 - +0.5 751,763 - -0.5 751,793 + -0.9 751,794 - -0.4 751,794 - -0.9 751,795 + +0.1 751,796 - +0.9 751,807 - -0.3 751,858 - -0.1 752,009 + HEPCGN_04290 0.12 +1.1
Or see this region's nucleotide sequence