Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegH and wza are separated by 658 nucleotides wza and wzb are separated by 5 nucleotides wzb and wzc are separated by 2 nucleotides
HEPCGN_02995: yegH - UPF0053 protein YegH, at 506,351 to 507,934
yegH
HEPCGN_03000: wza - polysaccharide export protein Wza, at 508,593 to 509,732
wza
HEPCGN_03005: wzb - low molecular weight protein-tyrosine-phosphatase Wzb, at 509,738 to 510,181
wzb
HEPCGN_03010: wzc - tyrosine-protein kinase Wzc, at 510,184 to 512,346
wzc
Position (kb) 508
509
510 Strain fitness (log2 ratio) -2
-1
0
1 at 507.671 kb on + strand, within yegH at 507.671 kb on + strand, within yegH at 507.685 kb on + strand, within yegH at 507.845 kb on - strand at 507.856 kb on + strand at 507.937 kb on + strand at 507.938 kb on - strand at 507.942 kb on - strand at 508.176 kb on + strand at 508.781 kb on - strand, within wza at 508.845 kb on + strand, within wza at 508.872 kb on - strand, within wza at 508.975 kb on - strand, within wza at 508.981 kb on - strand, within wza at 509.033 kb on + strand, within wza at 509.034 kb on - strand, within wza at 509.056 kb on - strand, within wza at 509.085 kb on - strand, within wza at 509.112 kb on + strand, within wza at 509.115 kb on - strand, within wza at 509.345 kb on + strand, within wza at 509.346 kb on - strand, within wza at 509.540 kb on + strand, within wza at 509.541 kb on - strand, within wza at 509.541 kb on - strand, within wza at 509.545 kb on - strand, within wza at 509.556 kb on - strand, within wza at 509.607 kb on + strand, within wza at 509.619 kb on + strand at 509.619 kb on + strand at 509.620 kb on - strand at 509.620 kb on - strand at 509.620 kb on - strand at 509.678 kb on + strand at 509.681 kb on + strand at 509.724 kb on - strand at 509.754 kb on + strand at 509.773 kb on + strand at 509.963 kb on + strand, within wzb at 509.964 kb on - strand, within wzb at 510.006 kb on + strand, within wzb at 510.120 kb on - strand, within wzb at 510.126 kb on + strand, within wzb at 510.177 kb on + strand at 510.178 kb on - strand at 510.179 kb on + strand at 510.179 kb on + strand at 510.302 kb on + strand at 510.303 kb on - strand at 510.325 kb on + strand at 510.325 kb on + strand at 510.349 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 507,671 + yegH HEPCGN_02995 0.83 +0.0 507,671 + yegH HEPCGN_02995 0.83 +0.1 507,685 + yegH HEPCGN_02995 0.84 +1.0 507,845 - -0.0 507,856 + -1.0 507,937 + -1.0 507,938 - -0.1 507,942 - +0.6 508,176 + -0.8 508,781 - wza HEPCGN_03000 0.16 -0.7 508,845 + wza HEPCGN_03000 0.22 +0.5 508,872 - wza HEPCGN_03000 0.24 +0.4 508,975 - wza HEPCGN_03000 0.34 -0.1 508,981 - wza HEPCGN_03000 0.34 +0.1 509,033 + wza HEPCGN_03000 0.39 -0.6 509,034 - wza HEPCGN_03000 0.39 +0.7 509,056 - wza HEPCGN_03000 0.41 -0.5 509,085 - wza HEPCGN_03000 0.43 -0.4 509,112 + wza HEPCGN_03000 0.46 -0.0 509,115 - wza HEPCGN_03000 0.46 +0.1 509,345 + wza HEPCGN_03000 0.66 +0.9 509,346 - wza HEPCGN_03000 0.66 +0.2 509,540 + wza HEPCGN_03000 0.83 +0.3 509,541 - wza HEPCGN_03000 0.83 -0.8 509,541 - wza HEPCGN_03000 0.83 -0.8 509,545 - wza HEPCGN_03000 0.84 -2.3 509,556 - wza HEPCGN_03000 0.84 -1.5 509,607 + wza HEPCGN_03000 0.89 +0.6 509,619 + -0.3 509,619 + +0.8 509,620 - -1.2 509,620 - +1.4 509,620 - -0.8 509,678 + -0.3 509,681 + -0.2 509,724 - +0.9 509,754 + -2.2 509,773 + +0.1 509,963 + wzb HEPCGN_03005 0.51 -0.4 509,964 - wzb HEPCGN_03005 0.51 +0.6 510,006 + wzb HEPCGN_03005 0.60 -0.1 510,120 - wzb HEPCGN_03005 0.86 -0.6 510,126 + wzb HEPCGN_03005 0.87 +0.2 510,177 + +0.7 510,178 - +0.1 510,179 + -0.0 510,179 + +1.0 510,302 + +1.6 510,303 - +0.1 510,325 + -0.1 510,325 + +0.3 510,349 + -0.3
Or see this region's nucleotide sequence