Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modC and ybhA are separated by 0 nucleotides ybhA and pgl are separated by 154 nucleotides
HEPCGN_01590: modC - molybdenum ABC transporter ATP-binding protein ModC, at 240,783 to 241,841
modC
HEPCGN_01595: ybhA - bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase, at 241,842 to 242,660
ybhA
HEPCGN_01600: pgl - 6-phosphogluconolactonase, at 242,815 to 243,810
pgl
Position (kb) 241
242
243 Strain fitness (log2 ratio) -1
0
1
2 at 240.967 kb on + strand, within modC at 240.967 kb on + strand, within modC at 241.015 kb on + strand, within modC at 241.021 kb on - strand, within modC at 241.291 kb on - strand, within modC at 241.332 kb on + strand, within modC at 241.332 kb on + strand, within modC at 241.332 kb on + strand, within modC at 241.333 kb on - strand, within modC at 241.498 kb on + strand, within modC at 241.499 kb on - strand, within modC at 241.565 kb on + strand, within modC at 241.667 kb on - strand, within modC at 241.686 kb on - strand, within modC at 241.688 kb on + strand, within modC at 241.688 kb on + strand, within modC at 241.688 kb on + strand, within modC at 241.693 kb on - strand, within modC at 241.807 kb on - strand at 241.857 kb on - strand at 241.858 kb on + strand at 242.285 kb on + strand, within ybhA at 242.341 kb on + strand, within ybhA at 242.341 kb on + strand, within ybhA at 242.342 kb on - strand, within ybhA at 242.342 kb on - strand, within ybhA at 242.397 kb on - strand, within ybhA at 242.463 kb on - strand, within ybhA at 242.472 kb on - strand, within ybhA at 242.513 kb on + strand, within ybhA at 242.552 kb on - strand, within ybhA at 242.620 kb on - strand at 242.675 kb on + strand at 242.796 kb on + strand at 242.830 kb on + strand at 242.830 kb on + strand at 242.831 kb on - strand at 242.965 kb on + strand, within pgl at 242.966 kb on - strand, within pgl at 242.966 kb on - strand, within pgl at 243.118 kb on - strand, within pgl at 243.118 kb on - strand, within pgl at 243.214 kb on - strand, within pgl at 243.214 kb on - strand, within pgl at 243.226 kb on - strand, within pgl at 243.264 kb on + strand, within pgl at 243.265 kb on - strand, within pgl at 243.265 kb on - strand, within pgl at 243.265 kb on - strand, within pgl at 243.360 kb on - strand, within pgl at 243.360 kb on - strand, within pgl at 243.379 kb on + strand, within pgl at 243.380 kb on - strand, within pgl at 243.385 kb on + strand, within pgl at 243.544 kb on + strand, within pgl at 243.613 kb on - strand, within pgl
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 240,967 + modC HEPCGN_01590 0.17 +0.4 240,967 + modC HEPCGN_01590 0.17 +0.9 241,015 + modC HEPCGN_01590 0.22 +0.1 241,021 - modC HEPCGN_01590 0.22 -0.1 241,291 - modC HEPCGN_01590 0.48 -0.2 241,332 + modC HEPCGN_01590 0.52 -1.2 241,332 + modC HEPCGN_01590 0.52 -1.0 241,332 + modC HEPCGN_01590 0.52 -0.1 241,333 - modC HEPCGN_01590 0.52 +0.4 241,498 + modC HEPCGN_01590 0.68 +0.5 241,499 - modC HEPCGN_01590 0.68 +0.8 241,565 + modC HEPCGN_01590 0.74 -1.3 241,667 - modC HEPCGN_01590 0.83 +1.0 241,686 - modC HEPCGN_01590 0.85 +0.1 241,688 + modC HEPCGN_01590 0.85 -0.0 241,688 + modC HEPCGN_01590 0.85 +0.3 241,688 + modC HEPCGN_01590 0.85 +0.1 241,693 - modC HEPCGN_01590 0.86 +1.0 241,807 - -0.5 241,857 - +0.4 241,858 + +0.4 242,285 + ybhA HEPCGN_01595 0.54 +0.5 242,341 + ybhA HEPCGN_01595 0.61 -0.1 242,341 + ybhA HEPCGN_01595 0.61 +2.0 242,342 - ybhA HEPCGN_01595 0.61 -0.3 242,342 - ybhA HEPCGN_01595 0.61 -0.1 242,397 - ybhA HEPCGN_01595 0.68 +0.2 242,463 - ybhA HEPCGN_01595 0.76 +0.2 242,472 - ybhA HEPCGN_01595 0.77 +0.2 242,513 + ybhA HEPCGN_01595 0.82 +0.0 242,552 - ybhA HEPCGN_01595 0.87 +0.9 242,620 - +0.7 242,675 + +0.3 242,796 + +0.3 242,830 + -0.0 242,830 + +0.5 242,831 - +0.2 242,965 + pgl HEPCGN_01600 0.15 -0.9 242,966 - pgl HEPCGN_01600 0.15 -0.8 242,966 - pgl HEPCGN_01600 0.15 -1.5 243,118 - pgl HEPCGN_01600 0.30 +0.8 243,118 - pgl HEPCGN_01600 0.30 -0.2 243,214 - pgl HEPCGN_01600 0.40 +0.0 243,214 - pgl HEPCGN_01600 0.40 +0.1 243,226 - pgl HEPCGN_01600 0.41 -1.4 243,264 + pgl HEPCGN_01600 0.45 -0.2 243,265 - pgl HEPCGN_01600 0.45 +0.4 243,265 - pgl HEPCGN_01600 0.45 -1.1 243,265 - pgl HEPCGN_01600 0.45 -0.2 243,360 - pgl HEPCGN_01600 0.55 -0.9 243,360 - pgl HEPCGN_01600 0.55 -0.1 243,379 + pgl HEPCGN_01600 0.57 -0.6 243,380 - pgl HEPCGN_01600 0.57 -1.0 243,385 + pgl HEPCGN_01600 0.57 +0.2 243,544 + pgl HEPCGN_01600 0.73 +0.6 243,613 - pgl HEPCGN_01600 0.80 -0.8
Or see this region's nucleotide sequence