Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22325

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpotI and potH overlap by 4 nucleotidespotH and potG are separated by 9 nucleotidespotG and potF are separated by 94 nucleotides NOLOHH_22315: potI - putrescine ABC transporter permease PotI, at 4,405,135 to 4,405,980 potI NOLOHH_22320: potH - putrescine ABC transporter permease PotH, at 4,405,977 to 4,406,930 potH NOLOHH_22325: potG - putrescine ABC transporter ATP-binding subunit PotG, at 4,406,940 to 4,408,073 potG NOLOHH_22330: potF - spermidine/putrescine ABC transporter substrate-binding protein PotF, at 4,408,168 to 4,409,280 potF Position (kb) 4406 4407 4408 4409Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4406.091 kb on - strand, within potHat 4406.241 kb on - strand, within potHat 4406.369 kb on - strand, within potHat 4406.461 kb on - strand, within potHat 4406.461 kb on - strand, within potHat 4406.523 kb on + strand, within potHat 4406.524 kb on - strand, within potHat 4406.524 kb on - strand, within potHat 4406.526 kb on + strand, within potHat 4406.527 kb on - strand, within potHat 4406.531 kb on + strand, within potHat 4406.531 kb on + strand, within potHat 4406.549 kb on + strand, within potHat 4406.550 kb on - strand, within potHat 4406.622 kb on + strand, within potHat 4406.635 kb on + strand, within potHat 4406.635 kb on + strand, within potHat 4406.635 kb on + strand, within potHat 4406.687 kb on + strand, within potHat 4406.735 kb on - strand, within potHat 4406.822 kb on - strand, within potHat 4406.882 kb on + strandat 4406.924 kb on + strandat 4406.941 kb on + strandat 4406.942 kb on - strandat 4407.135 kb on - strand, within potGat 4407.298 kb on - strand, within potGat 4407.298 kb on - strand, within potGat 4407.340 kb on + strand, within potGat 4407.362 kb on - strand, within potGat 4407.561 kb on + strand, within potGat 4407.564 kb on + strand, within potGat 4407.564 kb on + strand, within potGat 4407.564 kb on + strand, within potGat 4407.564 kb on + strand, within potGat 4407.758 kb on + strand, within potGat 4407.791 kb on + strand, within potGat 4407.791 kb on + strand, within potGat 4407.808 kb on + strand, within potGat 4407.846 kb on + strand, within potGat 4407.846 kb on + strand, within potGat 4407.846 kb on + strand, within potGat 4407.946 kb on + strand, within potGat 4407.947 kb on - strand, within potGat 4407.947 kb on - strand, within potGat 4407.947 kb on - strand, within potGat 4407.989 kb on - strandat 4408.156 kb on + strandat 4408.157 kb on - strandat 4408.157 kb on - strandat 4408.157 kb on - strandat 4408.157 kb on - strandat 4408.340 kb on + strand, within potFat 4408.341 kb on - strand, within potFat 4408.388 kb on + strand, within potFat 4408.403 kb on + strand, within potFat 4408.881 kb on + strand, within potFat 4408.882 kb on - strand, within potFat 4408.884 kb on - strand, within potFat 4409.066 kb on - strand, within potF

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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4,406,091 - potH NOLOHH_22320 0.12 -2.5
4,406,241 - potH NOLOHH_22320 0.28 -1.2
4,406,369 - potH NOLOHH_22320 0.41 -0.6
4,406,461 - potH NOLOHH_22320 0.51 -0.9
4,406,461 - potH NOLOHH_22320 0.51 +0.0
4,406,523 + potH NOLOHH_22320 0.57 +1.5
4,406,524 - potH NOLOHH_22320 0.57 -3.3
4,406,524 - potH NOLOHH_22320 0.57 +0.1
4,406,526 + potH NOLOHH_22320 0.58 -2.4
4,406,527 - potH NOLOHH_22320 0.58 +0.4
4,406,531 + potH NOLOHH_22320 0.58 +0.5
4,406,531 + potH NOLOHH_22320 0.58 +0.5
4,406,549 + potH NOLOHH_22320 0.60 -0.6
4,406,550 - potH NOLOHH_22320 0.60 -0.6
4,406,622 + potH NOLOHH_22320 0.68 -0.1
4,406,635 + potH NOLOHH_22320 0.69 +0.4
4,406,635 + potH NOLOHH_22320 0.69 +1.4
4,406,635 + potH NOLOHH_22320 0.69 -0.0
4,406,687 + potH NOLOHH_22320 0.74 -0.2
4,406,735 - potH NOLOHH_22320 0.79 -1.2
4,406,822 - potH NOLOHH_22320 0.89 -0.4
4,406,882 + +1.4
4,406,924 + +1.3
4,406,941 + -1.1
4,406,942 - +1.3
4,407,135 - potG NOLOHH_22325 0.17 +0.5
4,407,298 - potG NOLOHH_22325 0.32 +3.2
4,407,298 - potG NOLOHH_22325 0.32 -0.9
4,407,340 + potG NOLOHH_22325 0.35 +0.1
4,407,362 - potG NOLOHH_22325 0.37 -0.5
4,407,561 + potG NOLOHH_22325 0.55 +0.9
4,407,564 + potG NOLOHH_22325 0.55 -0.7
4,407,564 + potG NOLOHH_22325 0.55 -0.7
4,407,564 + potG NOLOHH_22325 0.55 -1.7
4,407,564 + potG NOLOHH_22325 0.55 +0.3
4,407,758 + potG NOLOHH_22325 0.72 -0.6
4,407,791 + potG NOLOHH_22325 0.75 +0.7
4,407,791 + potG NOLOHH_22325 0.75 -3.6
4,407,808 + potG NOLOHH_22325 0.77 -0.5
4,407,846 + potG NOLOHH_22325 0.80 +0.7
4,407,846 + potG NOLOHH_22325 0.80 +0.9
4,407,846 + potG NOLOHH_22325 0.80 +0.8
4,407,946 + potG NOLOHH_22325 0.89 -0.7
4,407,947 - potG NOLOHH_22325 0.89 +0.5
4,407,947 - potG NOLOHH_22325 0.89 -0.5
4,407,947 - potG NOLOHH_22325 0.89 +1.3
4,407,989 - -1.4
4,408,156 + -2.6
4,408,157 - -4.5
4,408,157 - +0.2
4,408,157 - -0.8
4,408,157 - +0.5
4,408,340 + potF NOLOHH_22330 0.15 -0.7
4,408,341 - potF NOLOHH_22330 0.16 -0.7
4,408,388 + potF NOLOHH_22330 0.20 -2.5
4,408,403 + potF NOLOHH_22330 0.21 -0.9
4,408,881 + potF NOLOHH_22330 0.64 -1.6
4,408,882 - potF NOLOHH_22330 0.64 +1.1
4,408,884 - potF NOLOHH_22330 0.64 -1.7
4,409,066 - potF NOLOHH_22330 0.81 -1.3

Or see this region's nucleotide sequence