Strain Fitness in Escherichia coli ECOR27 around NOLOHH_21735

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyccA and tusE are separated by 90 nucleotidestusE and yccX overlap by 4 nucleotidesyccX and rlmI are separated by 109 nucleotides NOLOHH_21725: yccA - FtsH protease modulator YccA, at 4,271,388 to 4,272,047 yccA NOLOHH_21730: tusE - sulfurtransferase TusE, at 4,272,138 to 4,272,467 tusE NOLOHH_21735: yccX - acylphosphatase, at 4,272,464 to 4,272,742 yccX NOLOHH_21740: rlmI - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 4,272,852 to 4,274,027 rlmI Position (kb) 4272 4273Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4271.565 kb on + strand, within yccAat 4271.676 kb on + strand, within yccAat 4271.676 kb on + strand, within yccAat 4271.677 kb on - strand, within yccAat 4271.702 kb on - strand, within yccAat 4271.754 kb on + strand, within yccAat 4271.755 kb on - strand, within yccAat 4271.777 kb on + strand, within yccAat 4271.831 kb on + strand, within yccAat 4271.958 kb on + strand, within yccAat 4271.982 kb on + strandat 4271.982 kb on + strandat 4271.994 kb on + strandat 4271.994 kb on + strandat 4271.994 kb on + strandat 4272.080 kb on + strandat 4272.080 kb on + strandat 4272.127 kb on + strandat 4272.465 kb on + strandat 4272.466 kb on - strandat 4272.570 kb on - strand, within yccXat 4272.670 kb on - strand, within yccXat 4272.712 kb on - strand, within yccXat 4272.832 kb on - strandat 4272.832 kb on - strandat 4272.844 kb on + strandat 4272.845 kb on - strandat 4272.845 kb on - strandat 4272.845 kb on - strandat 4272.851 kb on - strandat 4272.932 kb on + strandat 4272.999 kb on + strand, within rlmIat 4273.181 kb on + strand, within rlmIat 4273.524 kb on + strand, within rlmI

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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4,271,565 + yccA NOLOHH_21725 0.27 -0.5
4,271,676 + yccA NOLOHH_21725 0.44 -3.1
4,271,676 + yccA NOLOHH_21725 0.44 +1.3
4,271,677 - yccA NOLOHH_21725 0.44 +1.3
4,271,702 - yccA NOLOHH_21725 0.48 +1.6
4,271,754 + yccA NOLOHH_21725 0.55 -1.7
4,271,755 - yccA NOLOHH_21725 0.56 +1.2
4,271,777 + yccA NOLOHH_21725 0.59 +0.1
4,271,831 + yccA NOLOHH_21725 0.67 -1.3
4,271,958 + yccA NOLOHH_21725 0.86 +0.5
4,271,982 + +0.9
4,271,982 + +2.5
4,271,994 + -3.6
4,271,994 + -0.7
4,271,994 + -3.7
4,272,080 + +1.3
4,272,080 + -0.8
4,272,127 + +0.7
4,272,465 + +2.4
4,272,466 - -1.1
4,272,570 - yccX NOLOHH_21735 0.38 -2.3
4,272,670 - yccX NOLOHH_21735 0.74 -2.7
4,272,712 - yccX NOLOHH_21735 0.89 -3.7
4,272,832 - -0.0
4,272,832 - +0.5
4,272,844 + +0.4
4,272,845 - +1.6
4,272,845 - -0.7
4,272,845 - -3.0
4,272,851 - +1.2
4,272,932 + +0.4
4,272,999 + rlmI NOLOHH_21740 0.12 -0.4
4,273,181 + rlmI NOLOHH_21740 0.28 -1.6
4,273,524 + rlmI NOLOHH_21740 0.57 -1.0

Or see this region's nucleotide sequence