Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yccA and tusE are separated by 90 nucleotides tusE and yccX overlap by 4 nucleotides yccX and rlmI are separated by 109 nucleotides
NOLOHH_21725: yccA - FtsH protease modulator YccA, at 4,271,388 to 4,272,047
yccA
NOLOHH_21730: tusE - sulfurtransferase TusE, at 4,272,138 to 4,272,467
tusE
NOLOHH_21735: yccX - acylphosphatase, at 4,272,464 to 4,272,742
yccX
NOLOHH_21740: rlmI - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 4,272,852 to 4,274,027
rlmI
Position (kb)
4272
4273 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4271.565 kb on + strand, within yccA at 4271.676 kb on + strand, within yccA at 4271.676 kb on + strand, within yccA at 4271.677 kb on - strand, within yccA at 4271.702 kb on - strand, within yccA at 4271.754 kb on + strand, within yccA at 4271.755 kb on - strand, within yccA at 4271.777 kb on + strand, within yccA at 4271.831 kb on + strand, within yccA at 4271.958 kb on + strand, within yccA at 4271.982 kb on + strand at 4271.982 kb on + strand at 4271.994 kb on + strand at 4271.994 kb on + strand at 4271.994 kb on + strand at 4272.080 kb on + strand at 4272.080 kb on + strand at 4272.127 kb on + strand at 4272.465 kb on + strand at 4272.466 kb on - strand at 4272.570 kb on - strand, within yccX at 4272.670 kb on - strand, within yccX at 4272.712 kb on - strand, within yccX at 4272.832 kb on - strand at 4272.832 kb on - strand at 4272.844 kb on + strand at 4272.845 kb on - strand at 4272.845 kb on - strand at 4272.845 kb on - strand at 4272.851 kb on - strand at 4272.932 kb on + strand at 4272.999 kb on + strand, within rlmI at 4273.181 kb on + strand, within rlmI at 4273.524 kb on + strand, within rlmI
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 4,271,565 + yccA NOLOHH_21725 0.27 -0.5 4,271,676 + yccA NOLOHH_21725 0.44 -3.1 4,271,676 + yccA NOLOHH_21725 0.44 +1.3 4,271,677 - yccA NOLOHH_21725 0.44 +1.3 4,271,702 - yccA NOLOHH_21725 0.48 +1.6 4,271,754 + yccA NOLOHH_21725 0.55 -1.7 4,271,755 - yccA NOLOHH_21725 0.56 +1.2 4,271,777 + yccA NOLOHH_21725 0.59 +0.1 4,271,831 + yccA NOLOHH_21725 0.67 -1.3 4,271,958 + yccA NOLOHH_21725 0.86 +0.5 4,271,982 + +0.9 4,271,982 + +2.5 4,271,994 + -3.6 4,271,994 + -0.7 4,271,994 + -3.7 4,272,080 + +1.3 4,272,080 + -0.8 4,272,127 + +0.7 4,272,465 + +2.4 4,272,466 - -1.1 4,272,570 - yccX NOLOHH_21735 0.38 -2.3 4,272,670 - yccX NOLOHH_21735 0.74 -2.7 4,272,712 - yccX NOLOHH_21735 0.89 -3.7 4,272,832 - -0.0 4,272,832 - +0.5 4,272,844 + +0.4 4,272,845 - +1.6 4,272,845 - -0.7 4,272,845 - -3.0 4,272,851 - +1.2 4,272,932 + +0.4 4,272,999 + rlmI NOLOHH_21740 0.12 -0.4 4,273,181 + rlmI NOLOHH_21740 0.28 -1.6 4,273,524 + rlmI NOLOHH_21740 0.57 -1.0
Or see this region's nucleotide sequence