Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19780

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_19775 and NOLOHH_19780 are separated by 89 nucleotidesNOLOHH_19780 and NOLOHH_19785 are separated by 262 nucleotidesNOLOHH_19785 and NOLOHH_19790 are separated by 40 nucleotides NOLOHH_19775: NOLOHH_19775 - bacteriophage abortive infection AbiH family protein, at 3,899,863 to 3,900,771 _19775 NOLOHH_19780: NOLOHH_19780 - hypothetical protein, at 3,900,861 to 3,902,252 _19780 NOLOHH_19785: NOLOHH_19785 - DUF977 domain-containing protein, at 3,902,515 to 3,902,937 _19785 NOLOHH_19790: NOLOHH_19790 - phage replisome organizer, at 3,902,978 to 3,904,048 _19790 Position (kb) 3900 3901 3902 3903Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3901.337 kb on + strand, within NOLOHH_19780at 3901.713 kb on + strand, within NOLOHH_19780at 3901.806 kb on + strand, within NOLOHH_19780at 3902.214 kb on + strandat 3902.219 kb on + strandat 3902.313 kb on + strandat 3902.569 kb on - strand, within NOLOHH_19785at 3902.605 kb on - strand, within NOLOHH_19785at 3902.769 kb on - strand, within NOLOHH_19785at 3902.771 kb on - strand, within NOLOHH_19785at 3902.817 kb on - strand, within NOLOHH_19785at 3902.980 kb on - strandat 3902.980 kb on - strandat 3903.157 kb on - strand, within NOLOHH_19790

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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3,901,337 + NOLOHH_19780 0.34 -0.4
3,901,713 + NOLOHH_19780 0.61 -2.7
3,901,806 + NOLOHH_19780 0.68 -1.3
3,902,214 + -2.3
3,902,219 + +2.5
3,902,313 + +1.7
3,902,569 - NOLOHH_19785 0.13 +1.7
3,902,605 - NOLOHH_19785 0.21 -2.7
3,902,769 - NOLOHH_19785 0.60 -1.8
3,902,771 - NOLOHH_19785 0.61 +1.3
3,902,817 - NOLOHH_19785 0.71 -2.5
3,902,980 - -1.1
3,902,980 - -3.4
3,903,157 - NOLOHH_19790 0.17 +1.5

Or see this region's nucleotide sequence