Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_19775 and NOLOHH_19780 are separated by 89 nucleotides NOLOHH_19780 and NOLOHH_19785 are separated by 262 nucleotides NOLOHH_19785 and NOLOHH_19790 are separated by 40 nucleotides
NOLOHH_19775: NOLOHH_19775 - bacteriophage abortive infection AbiH family protein, at 3,899,863 to 3,900,771
_19775
NOLOHH_19780: NOLOHH_19780 - hypothetical protein, at 3,900,861 to 3,902,252
_19780
NOLOHH_19785: NOLOHH_19785 - DUF977 domain-containing protein, at 3,902,515 to 3,902,937
_19785
NOLOHH_19790: NOLOHH_19790 - phage replisome organizer, at 3,902,978 to 3,904,048
_19790
Position (kb)
3900
3901
3902
3903 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3901.337 kb on + strand, within NOLOHH_19780 at 3901.713 kb on + strand, within NOLOHH_19780 at 3901.806 kb on + strand, within NOLOHH_19780 at 3902.214 kb on + strand at 3902.219 kb on + strand at 3902.313 kb on + strand at 3902.569 kb on - strand, within NOLOHH_19785 at 3902.605 kb on - strand, within NOLOHH_19785 at 3902.769 kb on - strand, within NOLOHH_19785 at 3902.771 kb on - strand, within NOLOHH_19785 at 3902.817 kb on - strand, within NOLOHH_19785 at 3902.980 kb on - strand at 3902.980 kb on - strand at 3903.157 kb on - strand, within NOLOHH_19790
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 3,901,337 + NOLOHH_19780 0.34 -0.4 3,901,713 + NOLOHH_19780 0.61 -2.7 3,901,806 + NOLOHH_19780 0.68 -1.3 3,902,214 + -2.3 3,902,219 + +2.5 3,902,313 + +1.7 3,902,569 - NOLOHH_19785 0.13 +1.7 3,902,605 - NOLOHH_19785 0.21 -2.7 3,902,769 - NOLOHH_19785 0.60 -1.8 3,902,771 - NOLOHH_19785 0.61 +1.3 3,902,817 - NOLOHH_19785 0.71 -2.5 3,902,980 - -1.1 3,902,980 - -3.4 3,903,157 - NOLOHH_19790 0.17 +1.5
Or see this region's nucleotide sequence