Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18920

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddB and pqqL are separated by 56 nucleotidespqqL and gadB are separated by 361 nucleotides NOLOHH_18915: yddB - Uncharacterized protein YddB, at 3,710,722 to 3,713,094 yddB NOLOHH_18920: pqqL - putative zinc protease PqqL, at 3,713,151 to 3,715,934 pqqL NOLOHH_18925: gadB - glutamate decarboxylase, at 3,716,296 to 3,717,696 gadB Position (kb) 3713 3714 3715 3716Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3712.247 kb on - strand, within yddBat 3712.578 kb on - strand, within yddBat 3712.997 kb on + strandat 3713.022 kb on + strandat 3713.022 kb on + strandat 3713.146 kb on + strandat 3713.150 kb on + strandat 3713.390 kb on + strandat 3713.390 kb on + strandat 3713.875 kb on + strand, within pqqLat 3713.994 kb on + strand, within pqqLat 3714.100 kb on + strand, within pqqLat 3714.296 kb on + strand, within pqqLat 3714.421 kb on - strand, within pqqLat 3714.613 kb on - strand, within pqqLat 3715.128 kb on + strand, within pqqLat 3715.514 kb on - strand, within pqqL

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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3,712,247 - yddB NOLOHH_18915 0.64 -1.8
3,712,578 - yddB NOLOHH_18915 0.78 +0.7
3,712,997 + -2.6
3,713,022 + -0.5
3,713,022 + +0.0
3,713,146 + +1.5
3,713,150 + +0.7
3,713,390 + +0.8
3,713,390 + -0.5
3,713,875 + pqqL NOLOHH_18920 0.26 -0.7
3,713,994 + pqqL NOLOHH_18920 0.30 +1.1
3,714,100 + pqqL NOLOHH_18920 0.34 -1.6
3,714,296 + pqqL NOLOHH_18920 0.41 -3.3
3,714,421 - pqqL NOLOHH_18920 0.46 -4.0
3,714,613 - pqqL NOLOHH_18920 0.53 -3.0
3,715,128 + pqqL NOLOHH_18920 0.71 -0.2
3,715,514 - pqqL NOLOHH_18920 0.85 +1.4

Or see this region's nucleotide sequence