Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clcB and dmsD are separated by 194 nucleotides dmsD and NOLOHH_18265 are separated by 42 nucleotides NOLOHH_18265 and dmsB are separated by 1 nucleotides dmsB and bisC are separated by 10 nucleotides
NOLOHH_18255: clcB - voltage-gated ClC-type chloride channel ClcB, at 3,586,470 to 3,587,726
clcB
NOLOHH_18260: dmsD - Tat proofreading chaperone DmsD, at 3,587,921 to 3,588,535
dmsD
NOLOHH_18265: NOLOHH_18265 - dimethylsulfoxide reductase, at 3,588,578 to 3,589,432
_18265
NOLOHH_18270: dmsB - dimethylsulfoxide reductase subunit B, at 3,589,434 to 3,590,051
dmsB
NOLOHH_18275: bisC - Anaerobic selenocysteine-containing dehydrogenase, at 3,590,062 to 3,592,458
bisC
Position (kb)
3588
3589
3590 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3587.622 kb on - strand at 3587.727 kb on - strand at 3588.619 kb on - strand at 3588.663 kb on - strand at 3588.674 kb on - strand, within NOLOHH_18265 at 3588.674 kb on - strand, within NOLOHH_18265 at 3588.674 kb on - strand, within NOLOHH_18265 at 3589.080 kb on - strand, within NOLOHH_18265 at 3589.374 kb on - strand at 3589.374 kb on - strand at 3590.182 kb on - strand at 3590.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 3,587,622 - +1.2 3,587,727 - -0.9 3,588,619 - -1.5 3,588,663 - +2.2 3,588,674 - NOLOHH_18265 0.11 +0.5 3,588,674 - NOLOHH_18265 0.11 +2.3 3,588,674 - NOLOHH_18265 0.11 -4.1 3,589,080 - NOLOHH_18265 0.59 -2.4 3,589,374 - -0.5 3,589,374 - +0.5 3,590,182 - +2.1 3,590,233 - +1.5
Or see this region's nucleotide sequence