Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17145

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaV and dmlA are separated by 250 nucleotidesdmlA and dmlR are separated by 102 nucleotides NOLOHH_17140: yeaV - BCCT family transporter YeaV, at 3,365,316 to 3,366,926 yeaV NOLOHH_17145: dmlA - multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase, at 3,367,177 to 3,368,262 dmlA NOLOHH_17150: dmlR - DNA-binding transcriptional regulator DmlR, at 3,368,365 to 3,369,288 dmlR Position (kb) 3367 3368 3369Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3366.485 kb on - strand, within yeaVat 3366.716 kb on + strand, within yeaVat 3367.089 kb on + strandat 3367.519 kb on - strand, within dmlAat 3367.591 kb on - strand, within dmlAat 3367.596 kb on + strand, within dmlAat 3367.813 kb on - strand, within dmlAat 3368.005 kb on - strand, within dmlAat 3368.065 kb on - strand, within dmlAat 3368.112 kb on - strand, within dmlAat 3368.245 kb on - strandat 3368.309 kb on - strandat 3368.309 kb on - strandat 3368.310 kb on + strandat 3368.330 kb on - strandat 3368.404 kb on - strandat 3368.661 kb on + strand, within dmlR

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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3,366,485 - yeaV NOLOHH_17140 0.73 -1.7
3,366,716 + yeaV NOLOHH_17140 0.87 +1.1
3,367,089 + -0.2
3,367,519 - dmlA NOLOHH_17145 0.31 +0.8
3,367,591 - dmlA NOLOHH_17145 0.38 -0.6
3,367,596 + dmlA NOLOHH_17145 0.39 +2.3
3,367,813 - dmlA NOLOHH_17145 0.59 -3.2
3,368,005 - dmlA NOLOHH_17145 0.76 +0.1
3,368,065 - dmlA NOLOHH_17145 0.82 -1.0
3,368,112 - dmlA NOLOHH_17145 0.86 +0.9
3,368,245 - -2.8
3,368,309 - +0.8
3,368,309 - -2.3
3,368,310 + +1.3
3,368,330 - +0.1
3,368,404 - +1.2
3,368,661 + dmlR NOLOHH_17150 0.32 -1.2

Or see this region's nucleotide sequence