Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asmA and yegH are separated by 273 nucleotides yegH and wza are separated by 658 nucleotides
NOLOHH_15620: asmA - outer membrane assembly protein AsmA, at 3,072,389 to 3,074,242
asmA
NOLOHH_15625: yegH - UPF0053 protein YegH, at 3,074,516 to 3,076,099
yegH
NOLOHH_15630: wza - polysaccharide export protein Wza, at 3,076,758 to 3,077,897
wza
Position (kb)
3074
3075
3076
3077 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3073.575 kb on + strand, within asmA at 3073.642 kb on + strand, within asmA at 3073.704 kb on + strand, within asmA at 3073.704 kb on + strand, within asmA at 3073.704 kb on + strand, within asmA at 3074.130 kb on + strand at 3074.240 kb on + strand at 3074.240 kb on + strand at 3074.240 kb on + strand at 3074.241 kb on - strand at 3074.317 kb on + strand at 3074.318 kb on - strand at 3074.328 kb on + strand at 3074.328 kb on + strand at 3074.333 kb on - strand at 3074.371 kb on + strand at 3074.371 kb on + strand at 3074.480 kb on - strand at 3074.480 kb on - strand at 3074.527 kb on - strand at 3074.558 kb on - strand at 3074.611 kb on - strand at 3074.611 kb on - strand at 3074.689 kb on - strand, within yegH at 3074.722 kb on - strand, within yegH at 3074.747 kb on - strand, within yegH at 3074.747 kb on - strand, within yegH at 3074.859 kb on - strand, within yegH at 3075.030 kb on - strand, within yegH at 3075.214 kb on + strand, within yegH at 3075.214 kb on + strand, within yegH at 3075.215 kb on - strand, within yegH at 3075.407 kb on - strand, within yegH at 3075.639 kb on - strand, within yegH at 3075.836 kb on + strand, within yegH at 3075.837 kb on - strand, within yegH at 3076.076 kb on - strand at 3076.103 kb on - strand at 3076.103 kb on - strand at 3076.125 kb on - strand at 3076.200 kb on - strand at 3076.461 kb on - strand at 3076.732 kb on + strand at 3076.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 3,073,575 + asmA NOLOHH_15620 0.64 +1.5 3,073,642 + asmA NOLOHH_15620 0.68 +0.1 3,073,704 + asmA NOLOHH_15620 0.71 +0.4 3,073,704 + asmA NOLOHH_15620 0.71 +0.0 3,073,704 + asmA NOLOHH_15620 0.71 +1.0 3,074,130 + -0.4 3,074,240 + +0.3 3,074,240 + -0.2 3,074,240 + -2.2 3,074,241 - -1.9 3,074,317 + -2.7 3,074,318 - -2.2 3,074,328 + +0.9 3,074,328 + -0.2 3,074,333 - -1.2 3,074,371 + +0.9 3,074,371 + +2.3 3,074,480 - -0.4 3,074,480 - +2.5 3,074,527 - +0.4 3,074,558 - +0.6 3,074,611 - +1.7 3,074,611 - +1.1 3,074,689 - yegH NOLOHH_15625 0.11 +3.1 3,074,722 - yegH NOLOHH_15625 0.13 +1.5 3,074,747 - yegH NOLOHH_15625 0.15 -2.2 3,074,747 - yegH NOLOHH_15625 0.15 +1.5 3,074,859 - yegH NOLOHH_15625 0.22 +0.9 3,075,030 - yegH NOLOHH_15625 0.32 +1.6 3,075,214 + yegH NOLOHH_15625 0.44 -1.9 3,075,214 + yegH NOLOHH_15625 0.44 +2.3 3,075,215 - yegH NOLOHH_15625 0.44 +1.2 3,075,407 - yegH NOLOHH_15625 0.56 +0.8 3,075,639 - yegH NOLOHH_15625 0.71 +3.7 3,075,836 + yegH NOLOHH_15625 0.83 +1.7 3,075,837 - yegH NOLOHH_15625 0.83 +2.5 3,076,076 - +2.6 3,076,103 - +1.3 3,076,103 - +1.0 3,076,125 - +1.1 3,076,200 - -1.0 3,076,461 - -0.4 3,076,732 + -1.0 3,076,841 + -0.7
Or see this region's nucleotide sequence