Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15625

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasmA and yegH are separated by 273 nucleotidesyegH and wza are separated by 658 nucleotides NOLOHH_15620: asmA - outer membrane assembly protein AsmA, at 3,072,389 to 3,074,242 asmA NOLOHH_15625: yegH - UPF0053 protein YegH, at 3,074,516 to 3,076,099 yegH NOLOHH_15630: wza - polysaccharide export protein Wza, at 3,076,758 to 3,077,897 wza Position (kb) 3074 3075 3076 3077Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3073.575 kb on + strand, within asmAat 3073.642 kb on + strand, within asmAat 3073.704 kb on + strand, within asmAat 3073.704 kb on + strand, within asmAat 3073.704 kb on + strand, within asmAat 3074.130 kb on + strandat 3074.240 kb on + strandat 3074.240 kb on + strandat 3074.240 kb on + strandat 3074.241 kb on - strandat 3074.317 kb on + strandat 3074.318 kb on - strandat 3074.328 kb on + strandat 3074.328 kb on + strandat 3074.333 kb on - strandat 3074.371 kb on + strandat 3074.371 kb on + strandat 3074.480 kb on - strandat 3074.480 kb on - strandat 3074.527 kb on - strandat 3074.558 kb on - strandat 3074.611 kb on - strandat 3074.611 kb on - strandat 3074.689 kb on - strand, within yegHat 3074.722 kb on - strand, within yegHat 3074.747 kb on - strand, within yegHat 3074.747 kb on - strand, within yegHat 3074.859 kb on - strand, within yegHat 3075.030 kb on - strand, within yegHat 3075.214 kb on + strand, within yegHat 3075.214 kb on + strand, within yegHat 3075.215 kb on - strand, within yegHat 3075.407 kb on - strand, within yegHat 3075.639 kb on - strand, within yegHat 3075.836 kb on + strand, within yegHat 3075.837 kb on - strand, within yegHat 3076.076 kb on - strandat 3076.103 kb on - strandat 3076.103 kb on - strandat 3076.125 kb on - strandat 3076.200 kb on - strandat 3076.461 kb on - strandat 3076.732 kb on + strandat 3076.841 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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3,073,575 + asmA NOLOHH_15620 0.64 +1.5
3,073,642 + asmA NOLOHH_15620 0.68 +0.1
3,073,704 + asmA NOLOHH_15620 0.71 +0.4
3,073,704 + asmA NOLOHH_15620 0.71 +0.0
3,073,704 + asmA NOLOHH_15620 0.71 +1.0
3,074,130 + -0.4
3,074,240 + +0.3
3,074,240 + -0.2
3,074,240 + -2.2
3,074,241 - -1.9
3,074,317 + -2.7
3,074,318 - -2.2
3,074,328 + +0.9
3,074,328 + -0.2
3,074,333 - -1.2
3,074,371 + +0.9
3,074,371 + +2.3
3,074,480 - -0.4
3,074,480 - +2.5
3,074,527 - +0.4
3,074,558 - +0.6
3,074,611 - +1.7
3,074,611 - +1.1
3,074,689 - yegH NOLOHH_15625 0.11 +3.1
3,074,722 - yegH NOLOHH_15625 0.13 +1.5
3,074,747 - yegH NOLOHH_15625 0.15 -2.2
3,074,747 - yegH NOLOHH_15625 0.15 +1.5
3,074,859 - yegH NOLOHH_15625 0.22 +0.9
3,075,030 - yegH NOLOHH_15625 0.32 +1.6
3,075,214 + yegH NOLOHH_15625 0.44 -1.9
3,075,214 + yegH NOLOHH_15625 0.44 +2.3
3,075,215 - yegH NOLOHH_15625 0.44 +1.2
3,075,407 - yegH NOLOHH_15625 0.56 +0.8
3,075,639 - yegH NOLOHH_15625 0.71 +3.7
3,075,836 + yegH NOLOHH_15625 0.83 +1.7
3,075,837 - yegH NOLOHH_15625 0.83 +2.5
3,076,076 - +2.6
3,076,103 - +1.3
3,076,103 - +1.0
3,076,125 - +1.1
3,076,200 - -1.0
3,076,461 - -0.4
3,076,732 + -1.0
3,076,841 + -0.7

Or see this region's nucleotide sequence