Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14260

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroC and mepA are separated by 3 nucleotidesmepA and yfcA overlap by 1 nucleotidesyfcA and epmC overlap by 1 nucleotidesepmC and yfcL are separated by 33 nucleotidesyfcL and mnmC are separated by 55 nucleotides NOLOHH_14250: aroC - chorismate synthase, at 2,774,584 to 2,775,669 aroC NOLOHH_14255: mepA - penicillin-insensitive murein endopeptidase, at 2,775,673 to 2,776,497 mepA NOLOHH_14260: yfcA - putative membrane transporter protein YfcA, at 2,776,497 to 2,777,306 yfcA NOLOHH_14265: epmC - elongation factor P hydroxylase, at 2,777,306 to 2,777,854 epmC NOLOHH_14270: yfcL - Uncharacterized protein YfcL, at 2,777,888 to 2,778,166 yfcL NOLOHH_14275: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 2,778,222 to 2,780,228 mnmC Position (kb) 2776 2777 2778Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2775.844 kb on + strand, within mepAat 2775.875 kb on - strand, within mepAat 2776.299 kb on + strand, within mepAat 2776.300 kb on - strand, within mepAat 2776.307 kb on + strand, within mepAat 2776.307 kb on + strand, within mepAat 2776.307 kb on + strand, within mepAat 2776.307 kb on + strand, within mepAat 2776.495 kb on + strandat 2776.508 kb on + strandat 2776.691 kb on + strand, within yfcAat 2776.692 kb on - strand, within yfcAat 2776.707 kb on + strand, within yfcAat 2776.707 kb on + strand, within yfcAat 2776.707 kb on + strand, within yfcAat 2776.707 kb on + strand, within yfcAat 2776.708 kb on - strand, within yfcAat 2776.708 kb on - strand, within yfcAat 2776.736 kb on - strand, within yfcAat 2776.798 kb on + strand, within yfcAat 2776.798 kb on + strand, within yfcAat 2776.799 kb on - strand, within yfcAat 2776.803 kb on + strand, within yfcAat 2776.803 kb on + strand, within yfcAat 2776.803 kb on + strand, within yfcAat 2776.804 kb on - strand, within yfcAat 2776.914 kb on + strand, within yfcAat 2776.914 kb on + strand, within yfcAat 2776.914 kb on + strand, within yfcAat 2776.922 kb on - strand, within yfcAat 2777.012 kb on + strand, within yfcAat 2777.012 kb on + strand, within yfcAat 2777.078 kb on + strand, within yfcAat 2777.089 kb on + strand, within yfcAat 2777.255 kb on - strandat 2777.255 kb on - strandat 2777.259 kb on + strandat 2777.259 kb on + strandat 2777.260 kb on - strandat 2777.314 kb on + strandat 2777.386 kb on + strand, within epmCat 2777.408 kb on + strand, within epmCat 2777.408 kb on + strand, within epmCat 2777.408 kb on + strand, within epmCat 2777.430 kb on + strand, within epmCat 2777.435 kb on + strand, within epmCat 2777.435 kb on + strand, within epmCat 2777.436 kb on - strand, within epmCat 2777.465 kb on + strand, within epmCat 2777.466 kb on - strand, within epmCat 2777.500 kb on + strand, within epmCat 2777.871 kb on + strandat 2777.871 kb on + strandat 2777.871 kb on + strandat 2777.871 kb on + strandat 2777.872 kb on - strandat 2777.975 kb on + strand, within yfcLat 2777.976 kb on - strand, within yfcLat 2778.045 kb on + strand, within yfcLat 2778.046 kb on - strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.049 kb on + strand, within yfcLat 2778.050 kb on - strand, within yfcLat 2778.050 kb on - strand, within yfcLat 2778.164 kb on + strandat 2778.164 kb on + strandat 2778.165 kb on - strandat 2778.165 kb on - strandat 2778.168 kb on + strandat 2778.168 kb on + strandat 2778.168 kb on + strandat 2778.168 kb on + strandat 2778.273 kb on - strandat 2778.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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2,775,844 + mepA NOLOHH_14255 0.21 +0.2
2,775,875 - mepA NOLOHH_14255 0.24 +0.3
2,776,299 + mepA NOLOHH_14255 0.76 -0.5
2,776,300 - mepA NOLOHH_14255 0.76 -2.8
2,776,307 + mepA NOLOHH_14255 0.77 +0.2
2,776,307 + mepA NOLOHH_14255 0.77 -0.2
2,776,307 + mepA NOLOHH_14255 0.77 -3.5
2,776,307 + mepA NOLOHH_14255 0.77 +0.6
2,776,495 + -3.4
2,776,508 + +1.6
2,776,691 + yfcA NOLOHH_14260 0.24 +1.1
2,776,692 - yfcA NOLOHH_14260 0.24 +1.0
2,776,707 + yfcA NOLOHH_14260 0.26 -0.5
2,776,707 + yfcA NOLOHH_14260 0.26 -0.6
2,776,707 + yfcA NOLOHH_14260 0.26 +0.1
2,776,707 + yfcA NOLOHH_14260 0.26 -0.1
2,776,708 - yfcA NOLOHH_14260 0.26 +1.1
2,776,708 - yfcA NOLOHH_14260 0.26 -1.7
2,776,736 - yfcA NOLOHH_14260 0.30 -0.2
2,776,798 + yfcA NOLOHH_14260 0.37 -0.3
2,776,798 + yfcA NOLOHH_14260 0.37 -1.5
2,776,799 - yfcA NOLOHH_14260 0.37 -1.5
2,776,803 + yfcA NOLOHH_14260 0.38 -0.4
2,776,803 + yfcA NOLOHH_14260 0.38 +0.5
2,776,803 + yfcA NOLOHH_14260 0.38 -1.9
2,776,804 - yfcA NOLOHH_14260 0.38 +2.6
2,776,914 + yfcA NOLOHH_14260 0.51 +0.8
2,776,914 + yfcA NOLOHH_14260 0.51 +1.2
2,776,914 + yfcA NOLOHH_14260 0.51 -1.3
2,776,922 - yfcA NOLOHH_14260 0.52 +0.7
2,777,012 + yfcA NOLOHH_14260 0.64 -1.2
2,777,012 + yfcA NOLOHH_14260 0.64 +1.3
2,777,078 + yfcA NOLOHH_14260 0.72 -1.5
2,777,089 + yfcA NOLOHH_14260 0.73 +1.2
2,777,255 - +1.5
2,777,255 - +1.0
2,777,259 + -0.4
2,777,259 + +0.5
2,777,260 - +1.6
2,777,314 + +0.2
2,777,386 + epmC NOLOHH_14265 0.15 +0.4
2,777,408 + epmC NOLOHH_14265 0.19 +1.4
2,777,408 + epmC NOLOHH_14265 0.19 +0.8
2,777,408 + epmC NOLOHH_14265 0.19 -0.2
2,777,430 + epmC NOLOHH_14265 0.23 -0.7
2,777,435 + epmC NOLOHH_14265 0.23 -1.4
2,777,435 + epmC NOLOHH_14265 0.23 +1.1
2,777,436 - epmC NOLOHH_14265 0.24 +1.5
2,777,465 + epmC NOLOHH_14265 0.29 -1.6
2,777,466 - epmC NOLOHH_14265 0.29 -0.9
2,777,500 + epmC NOLOHH_14265 0.35 +0.5
2,777,871 + +0.3
2,777,871 + +0.0
2,777,871 + +0.6
2,777,871 + -1.0
2,777,872 - +0.3
2,777,975 + yfcL NOLOHH_14270 0.31 +0.4
2,777,976 - yfcL NOLOHH_14270 0.32 -0.4
2,778,045 + yfcL NOLOHH_14270 0.56 -2.2
2,778,046 - yfcL NOLOHH_14270 0.57 -1.5
2,778,049 + yfcL NOLOHH_14270 0.58 -0.1
2,778,049 + yfcL NOLOHH_14270 0.58 +0.4
2,778,049 + yfcL NOLOHH_14270 0.58 -3.6
2,778,049 + yfcL NOLOHH_14270 0.58 -1.9
2,778,049 + yfcL NOLOHH_14270 0.58 +0.4
2,778,049 + yfcL NOLOHH_14270 0.58 +0.3
2,778,049 + yfcL NOLOHH_14270 0.58 +0.0
2,778,049 + yfcL NOLOHH_14270 0.58 +0.9
2,778,050 - yfcL NOLOHH_14270 0.58 -3.0
2,778,050 - yfcL NOLOHH_14270 0.58 -1.6
2,778,164 + -1.5
2,778,164 + +0.0
2,778,165 - -2.4
2,778,165 - -1.4
2,778,168 + -1.8
2,778,168 + +0.8
2,778,168 + -0.7
2,778,168 + -0.8
2,778,273 - +0.6
2,778,297 - -0.3

Or see this region's nucleotide sequence