Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroC and mepA are separated by 3 nucleotides mepA and yfcA overlap by 1 nucleotides yfcA and epmC overlap by 1 nucleotides epmC and yfcL are separated by 33 nucleotides yfcL and mnmC are separated by 55 nucleotides
NOLOHH_14250: aroC - chorismate synthase, at 2,774,584 to 2,775,669
aroC
NOLOHH_14255: mepA - penicillin-insensitive murein endopeptidase, at 2,775,673 to 2,776,497
mepA
NOLOHH_14260: yfcA - putative membrane transporter protein YfcA, at 2,776,497 to 2,777,306
yfcA
NOLOHH_14265: epmC - elongation factor P hydroxylase, at 2,777,306 to 2,777,854
epmC
NOLOHH_14270: yfcL - Uncharacterized protein YfcL, at 2,777,888 to 2,778,166
yfcL
NOLOHH_14275: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 2,778,222 to 2,780,228
mnmC
Position (kb)
2776
2777
2778 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2775.844 kb on + strand, within mepA at 2775.875 kb on - strand, within mepA at 2776.299 kb on + strand, within mepA at 2776.300 kb on - strand, within mepA at 2776.307 kb on + strand, within mepA at 2776.307 kb on + strand, within mepA at 2776.307 kb on + strand, within mepA at 2776.307 kb on + strand, within mepA at 2776.495 kb on + strand at 2776.508 kb on + strand at 2776.691 kb on + strand, within yfcA at 2776.692 kb on - strand, within yfcA at 2776.707 kb on + strand, within yfcA at 2776.707 kb on + strand, within yfcA at 2776.707 kb on + strand, within yfcA at 2776.707 kb on + strand, within yfcA at 2776.708 kb on - strand, within yfcA at 2776.708 kb on - strand, within yfcA at 2776.736 kb on - strand, within yfcA at 2776.798 kb on + strand, within yfcA at 2776.798 kb on + strand, within yfcA at 2776.799 kb on - strand, within yfcA at 2776.803 kb on + strand, within yfcA at 2776.803 kb on + strand, within yfcA at 2776.803 kb on + strand, within yfcA at 2776.804 kb on - strand, within yfcA at 2776.914 kb on + strand, within yfcA at 2776.914 kb on + strand, within yfcA at 2776.914 kb on + strand, within yfcA at 2776.922 kb on - strand, within yfcA at 2777.012 kb on + strand, within yfcA at 2777.012 kb on + strand, within yfcA at 2777.078 kb on + strand, within yfcA at 2777.089 kb on + strand, within yfcA at 2777.255 kb on - strand at 2777.255 kb on - strand at 2777.259 kb on + strand at 2777.259 kb on + strand at 2777.260 kb on - strand at 2777.314 kb on + strand at 2777.386 kb on + strand, within epmC at 2777.408 kb on + strand, within epmC at 2777.408 kb on + strand, within epmC at 2777.408 kb on + strand, within epmC at 2777.430 kb on + strand, within epmC at 2777.435 kb on + strand, within epmC at 2777.435 kb on + strand, within epmC at 2777.436 kb on - strand, within epmC at 2777.465 kb on + strand, within epmC at 2777.466 kb on - strand, within epmC at 2777.500 kb on + strand, within epmC at 2777.871 kb on + strand at 2777.871 kb on + strand at 2777.871 kb on + strand at 2777.871 kb on + strand at 2777.872 kb on - strand at 2777.975 kb on + strand, within yfcL at 2777.976 kb on - strand, within yfcL at 2778.045 kb on + strand, within yfcL at 2778.046 kb on - strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.049 kb on + strand, within yfcL at 2778.050 kb on - strand, within yfcL at 2778.050 kb on - strand, within yfcL at 2778.164 kb on + strand at 2778.164 kb on + strand at 2778.165 kb on - strand at 2778.165 kb on - strand at 2778.168 kb on + strand at 2778.168 kb on + strand at 2778.168 kb on + strand at 2778.168 kb on + strand at 2778.273 kb on - strand at 2778.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 2,775,844 + mepA NOLOHH_14255 0.21 +0.2 2,775,875 - mepA NOLOHH_14255 0.24 +0.3 2,776,299 + mepA NOLOHH_14255 0.76 -0.5 2,776,300 - mepA NOLOHH_14255 0.76 -2.8 2,776,307 + mepA NOLOHH_14255 0.77 +0.2 2,776,307 + mepA NOLOHH_14255 0.77 -0.2 2,776,307 + mepA NOLOHH_14255 0.77 -3.5 2,776,307 + mepA NOLOHH_14255 0.77 +0.6 2,776,495 + -3.4 2,776,508 + +1.6 2,776,691 + yfcA NOLOHH_14260 0.24 +1.1 2,776,692 - yfcA NOLOHH_14260 0.24 +1.0 2,776,707 + yfcA NOLOHH_14260 0.26 -0.5 2,776,707 + yfcA NOLOHH_14260 0.26 -0.6 2,776,707 + yfcA NOLOHH_14260 0.26 +0.1 2,776,707 + yfcA NOLOHH_14260 0.26 -0.1 2,776,708 - yfcA NOLOHH_14260 0.26 +1.1 2,776,708 - yfcA NOLOHH_14260 0.26 -1.7 2,776,736 - yfcA NOLOHH_14260 0.30 -0.2 2,776,798 + yfcA NOLOHH_14260 0.37 -0.3 2,776,798 + yfcA NOLOHH_14260 0.37 -1.5 2,776,799 - yfcA NOLOHH_14260 0.37 -1.5 2,776,803 + yfcA NOLOHH_14260 0.38 -0.4 2,776,803 + yfcA NOLOHH_14260 0.38 +0.5 2,776,803 + yfcA NOLOHH_14260 0.38 -1.9 2,776,804 - yfcA NOLOHH_14260 0.38 +2.6 2,776,914 + yfcA NOLOHH_14260 0.51 +0.8 2,776,914 + yfcA NOLOHH_14260 0.51 +1.2 2,776,914 + yfcA NOLOHH_14260 0.51 -1.3 2,776,922 - yfcA NOLOHH_14260 0.52 +0.7 2,777,012 + yfcA NOLOHH_14260 0.64 -1.2 2,777,012 + yfcA NOLOHH_14260 0.64 +1.3 2,777,078 + yfcA NOLOHH_14260 0.72 -1.5 2,777,089 + yfcA NOLOHH_14260 0.73 +1.2 2,777,255 - +1.5 2,777,255 - +1.0 2,777,259 + -0.4 2,777,259 + +0.5 2,777,260 - +1.6 2,777,314 + +0.2 2,777,386 + epmC NOLOHH_14265 0.15 +0.4 2,777,408 + epmC NOLOHH_14265 0.19 +1.4 2,777,408 + epmC NOLOHH_14265 0.19 +0.8 2,777,408 + epmC NOLOHH_14265 0.19 -0.2 2,777,430 + epmC NOLOHH_14265 0.23 -0.7 2,777,435 + epmC NOLOHH_14265 0.23 -1.4 2,777,435 + epmC NOLOHH_14265 0.23 +1.1 2,777,436 - epmC NOLOHH_14265 0.24 +1.5 2,777,465 + epmC NOLOHH_14265 0.29 -1.6 2,777,466 - epmC NOLOHH_14265 0.29 -0.9 2,777,500 + epmC NOLOHH_14265 0.35 +0.5 2,777,871 + +0.3 2,777,871 + +0.0 2,777,871 + +0.6 2,777,871 + -1.0 2,777,872 - +0.3 2,777,975 + yfcL NOLOHH_14270 0.31 +0.4 2,777,976 - yfcL NOLOHH_14270 0.32 -0.4 2,778,045 + yfcL NOLOHH_14270 0.56 -2.2 2,778,046 - yfcL NOLOHH_14270 0.57 -1.5 2,778,049 + yfcL NOLOHH_14270 0.58 -0.1 2,778,049 + yfcL NOLOHH_14270 0.58 +0.4 2,778,049 + yfcL NOLOHH_14270 0.58 -3.6 2,778,049 + yfcL NOLOHH_14270 0.58 -1.9 2,778,049 + yfcL NOLOHH_14270 0.58 +0.4 2,778,049 + yfcL NOLOHH_14270 0.58 +0.3 2,778,049 + yfcL NOLOHH_14270 0.58 +0.0 2,778,049 + yfcL NOLOHH_14270 0.58 +0.9 2,778,050 - yfcL NOLOHH_14270 0.58 -3.0 2,778,050 - yfcL NOLOHH_14270 0.58 -1.6 2,778,164 + -1.5 2,778,164 + +0.0 2,778,165 - -2.4 2,778,165 - -1.4 2,778,168 + -1.8 2,778,168 + +0.8 2,778,168 + -0.7 2,778,168 + -0.8 2,778,273 - +0.6 2,778,297 - -0.3
Or see this region's nucleotide sequence