Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14120

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntevgA and evgL overlap by 4 nucleotidesevgL and emrK are separated by 388 nucleotidesemrK and emrY overlap by 1 nucleotides NOLOHH_14110: evgA - acid-sensing system DNA-binding response regulator EvgA, at 2,744,682 to 2,745,296 evgA NOLOHH_14115: evgL - Protein EvgL, at 2,745,293 to 2,745,322 evgL NOLOHH_14120: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 2,745,711 to 2,746,874 emrK NOLOHH_14125: emrY - multidrug efflux MFS transporter permease subunit EmrY, at 2,746,874 to 2,748,412 emrY Position (kb) 2745 2746 2747Strain fitness (log2 ratio) -1 0 1at 2745.297 kb on - strand, within evgLat 2745.338 kb on - strandat 2745.341 kb on - strandat 2745.408 kb on - strandat 2745.420 kb on - strandat 2745.421 kb on + strandat 2745.422 kb on - strandat 2745.427 kb on - strandat 2745.591 kb on + strandat 2745.920 kb on + strand, within emrKat 2746.365 kb on - strand, within emrKat 2746.478 kb on + strand, within emrKat 2746.509 kb on - strand, within emrKat 2746.722 kb on - strand, within emrKat 2746.808 kb on - strandat 2747.004 kb on + strandat 2747.065 kb on - strand, within emrYat 2747.310 kb on + strand, within emrYat 2747.448 kb on + strand, within emrYat 2747.448 kb on + strand, within emrYat 2747.864 kb on + strand, within emrY

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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2,745,297 - evgL NOLOHH_14115 0.13 +0.2
2,745,338 - +0.8
2,745,341 - -0.0
2,745,408 - -0.4
2,745,420 - +0.5
2,745,421 + +0.6
2,745,422 - -0.3
2,745,427 - +0.0
2,745,591 + +0.9
2,745,920 + emrK NOLOHH_14120 0.18 +1.1
2,746,365 - emrK NOLOHH_14120 0.56 -0.5
2,746,478 + emrK NOLOHH_14120 0.66 -0.7
2,746,509 - emrK NOLOHH_14120 0.69 +0.9
2,746,722 - emrK NOLOHH_14120 0.87 +1.3
2,746,808 - -0.5
2,747,004 + -0.2
2,747,065 - emrY NOLOHH_14125 0.12 +0.6
2,747,310 + emrY NOLOHH_14125 0.28 -0.1
2,747,448 + emrY NOLOHH_14125 0.37 -0.8
2,747,448 + emrY NOLOHH_14125 0.37 +0.3
2,747,864 + emrY NOLOHH_14125 0.64 +0.5

Or see this region's nucleotide sequence