Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfeH and yfeR are separated by 89 nucleotides yfeR and NOLOHH_13915 are separated by 38 nucleotides
NOLOHH_13905: yfeH - Putative symporter YfeH, at 2,702,615 to 2,703,613
yfeH
NOLOHH_13910: yfeR - Uncharacterized HTH-type transcriptional regulator YfeR, at 2,703,703 to 2,704,629
yfeR
NOLOHH_13915: NOLOHH_13915 - Nucleoside-specific channel-forming protein, Tsx, at 2,704,668 to 2,705,432
_13915
Position (kb)
2703
2704
2705 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2702.743 kb on + strand, within yfeH at 2702.825 kb on - strand, within yfeH at 2702.825 kb on - strand, within yfeH at 2702.876 kb on - strand, within yfeH at 2702.880 kb on - strand, within yfeH at 2702.957 kb on - strand, within yfeH at 2702.987 kb on - strand, within yfeH at 2702.987 kb on - strand, within yfeH at 2702.987 kb on - strand, within yfeH at 2702.988 kb on + strand, within yfeH at 2703.113 kb on - strand, within yfeH at 2703.113 kb on - strand, within yfeH at 2703.304 kb on - strand, within yfeH at 2703.318 kb on + strand, within yfeH at 2703.319 kb on - strand, within yfeH at 2703.402 kb on - strand, within yfeH at 2703.440 kb on - strand, within yfeH at 2703.473 kb on - strand, within yfeH at 2703.473 kb on - strand, within yfeH at 2703.725 kb on + strand at 2703.879 kb on + strand, within yfeR at 2703.879 kb on + strand, within yfeR at 2704.246 kb on + strand, within yfeR at 2704.246 kb on + strand, within yfeR at 2704.246 kb on + strand, within yfeR at 2704.246 kb on + strand, within yfeR at 2704.247 kb on - strand, within yfeR at 2704.250 kb on + strand, within yfeR at 2704.250 kb on + strand, within yfeR at 2704.265 kb on + strand, within yfeR at 2704.345 kb on - strand, within yfeR at 2704.357 kb on - strand, within yfeR at 2704.422 kb on + strand, within yfeR at 2704.568 kb on + strand at 2704.568 kb on + strand at 2704.568 kb on + strand at 2704.619 kb on - strand at 2704.625 kb on + strand at 2704.625 kb on + strand at 2704.626 kb on - strand at 2704.627 kb on + strand at 2704.627 kb on + strand at 2704.627 kb on + strand at 2704.628 kb on - strand at 2704.628 kb on - strand at 2704.691 kb on - strand at 2704.691 kb on - strand at 2704.760 kb on + strand, within NOLOHH_13915 at 2704.760 kb on + strand, within NOLOHH_13915 at 2704.834 kb on + strand, within NOLOHH_13915 at 2704.834 kb on + strand, within NOLOHH_13915 at 2704.835 kb on - strand, within NOLOHH_13915 at 2704.835 kb on - strand, within NOLOHH_13915 at 2704.835 kb on - strand, within NOLOHH_13915 at 2704.858 kb on + strand, within NOLOHH_13915 at 2704.934 kb on - strand, within NOLOHH_13915 at 2704.951 kb on + strand, within NOLOHH_13915 at 2704.968 kb on - strand, within NOLOHH_13915 at 2704.968 kb on - strand, within NOLOHH_13915 at 2704.977 kb on - strand, within NOLOHH_13915 at 2705.020 kb on + strand, within NOLOHH_13915 at 2705.043 kb on - strand, within NOLOHH_13915 at 2705.043 kb on - strand, within NOLOHH_13915 at 2705.130 kb on - strand, within NOLOHH_13915 at 2705.138 kb on + strand, within NOLOHH_13915 at 2705.395 kb on - strand at 2705.397 kb on - strand at 2705.437 kb on + strand at 2705.566 kb on + strand at 2705.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 2,702,743 + yfeH NOLOHH_13905 0.13 +0.5 2,702,825 - yfeH NOLOHH_13905 0.21 +0.6 2,702,825 - yfeH NOLOHH_13905 0.21 -1.7 2,702,876 - yfeH NOLOHH_13905 0.26 +0.9 2,702,880 - yfeH NOLOHH_13905 0.27 -0.6 2,702,957 - yfeH NOLOHH_13905 0.34 -2.5 2,702,987 - yfeH NOLOHH_13905 0.37 -0.4 2,702,987 - yfeH NOLOHH_13905 0.37 -0.6 2,702,987 - yfeH NOLOHH_13905 0.37 -2.9 2,702,988 + yfeH NOLOHH_13905 0.37 -1.5 2,703,113 - yfeH NOLOHH_13905 0.50 -1.0 2,703,113 - yfeH NOLOHH_13905 0.50 +0.6 2,703,304 - yfeH NOLOHH_13905 0.69 +1.3 2,703,318 + yfeH NOLOHH_13905 0.70 -1.9 2,703,319 - yfeH NOLOHH_13905 0.70 -0.1 2,703,402 - yfeH NOLOHH_13905 0.79 -0.7 2,703,440 - yfeH NOLOHH_13905 0.83 -0.2 2,703,473 - yfeH NOLOHH_13905 0.86 +1.2 2,703,473 - yfeH NOLOHH_13905 0.86 +0.9 2,703,725 + -1.0 2,703,879 + yfeR NOLOHH_13910 0.19 +0.4 2,703,879 + yfeR NOLOHH_13910 0.19 -0.7 2,704,246 + yfeR NOLOHH_13910 0.59 +1.4 2,704,246 + yfeR NOLOHH_13910 0.59 +1.5 2,704,246 + yfeR NOLOHH_13910 0.59 +1.3 2,704,246 + yfeR NOLOHH_13910 0.59 +0.3 2,704,247 - yfeR NOLOHH_13910 0.59 -2.7 2,704,250 + yfeR NOLOHH_13910 0.59 -1.3 2,704,250 + yfeR NOLOHH_13910 0.59 -0.7 2,704,265 + yfeR NOLOHH_13910 0.61 -0.3 2,704,345 - yfeR NOLOHH_13910 0.69 -2.6 2,704,357 - yfeR NOLOHH_13910 0.71 +1.1 2,704,422 + yfeR NOLOHH_13910 0.78 +1.2 2,704,568 + -1.8 2,704,568 + +0.1 2,704,568 + -0.5 2,704,619 - +1.3 2,704,625 + -2.2 2,704,625 + +0.5 2,704,626 - +3.6 2,704,627 + +0.8 2,704,627 + -1.1 2,704,627 + -0.1 2,704,628 - -0.5 2,704,628 - +2.5 2,704,691 - -1.4 2,704,691 - -0.1 2,704,760 + NOLOHH_13915 0.12 -1.7 2,704,760 + NOLOHH_13915 0.12 +0.9 2,704,834 + NOLOHH_13915 0.22 -0.0 2,704,834 + NOLOHH_13915 0.22 +0.8 2,704,835 - NOLOHH_13915 0.22 -0.1 2,704,835 - NOLOHH_13915 0.22 +1.5 2,704,835 - NOLOHH_13915 0.22 +0.0 2,704,858 + NOLOHH_13915 0.25 +0.5 2,704,934 - NOLOHH_13915 0.35 -2.4 2,704,951 + NOLOHH_13915 0.37 -0.7 2,704,968 - NOLOHH_13915 0.39 +0.3 2,704,968 - NOLOHH_13915 0.39 -0.5 2,704,977 - NOLOHH_13915 0.40 +1.6 2,705,020 + NOLOHH_13915 0.46 +1.2 2,705,043 - NOLOHH_13915 0.49 +0.4 2,705,043 - NOLOHH_13915 0.49 +0.5 2,705,130 - NOLOHH_13915 0.60 +0.4 2,705,138 + NOLOHH_13915 0.61 -2.3 2,705,395 - +0.4 2,705,397 - +0.2 2,705,437 + -0.2 2,705,566 + +1.0 2,705,617 + +0.9
Or see this region's nucleotide sequence