Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13910

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfeH and yfeR are separated by 89 nucleotidesyfeR and NOLOHH_13915 are separated by 38 nucleotides NOLOHH_13905: yfeH - Putative symporter YfeH, at 2,702,615 to 2,703,613 yfeH NOLOHH_13910: yfeR - Uncharacterized HTH-type transcriptional regulator YfeR, at 2,703,703 to 2,704,629 yfeR NOLOHH_13915: NOLOHH_13915 - Nucleoside-specific channel-forming protein, Tsx, at 2,704,668 to 2,705,432 _13915 Position (kb) 2703 2704 2705Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2702.743 kb on + strand, within yfeHat 2702.825 kb on - strand, within yfeHat 2702.825 kb on - strand, within yfeHat 2702.876 kb on - strand, within yfeHat 2702.880 kb on - strand, within yfeHat 2702.957 kb on - strand, within yfeHat 2702.987 kb on - strand, within yfeHat 2702.987 kb on - strand, within yfeHat 2702.987 kb on - strand, within yfeHat 2702.988 kb on + strand, within yfeHat 2703.113 kb on - strand, within yfeHat 2703.113 kb on - strand, within yfeHat 2703.304 kb on - strand, within yfeHat 2703.318 kb on + strand, within yfeHat 2703.319 kb on - strand, within yfeHat 2703.402 kb on - strand, within yfeHat 2703.440 kb on - strand, within yfeHat 2703.473 kb on - strand, within yfeHat 2703.473 kb on - strand, within yfeHat 2703.725 kb on + strandat 2703.879 kb on + strand, within yfeRat 2703.879 kb on + strand, within yfeRat 2704.246 kb on + strand, within yfeRat 2704.246 kb on + strand, within yfeRat 2704.246 kb on + strand, within yfeRat 2704.246 kb on + strand, within yfeRat 2704.247 kb on - strand, within yfeRat 2704.250 kb on + strand, within yfeRat 2704.250 kb on + strand, within yfeRat 2704.265 kb on + strand, within yfeRat 2704.345 kb on - strand, within yfeRat 2704.357 kb on - strand, within yfeRat 2704.422 kb on + strand, within yfeRat 2704.568 kb on + strandat 2704.568 kb on + strandat 2704.568 kb on + strandat 2704.619 kb on - strandat 2704.625 kb on + strandat 2704.625 kb on + strandat 2704.626 kb on - strandat 2704.627 kb on + strandat 2704.627 kb on + strandat 2704.627 kb on + strandat 2704.628 kb on - strandat 2704.628 kb on - strandat 2704.691 kb on - strandat 2704.691 kb on - strandat 2704.760 kb on + strand, within NOLOHH_13915at 2704.760 kb on + strand, within NOLOHH_13915at 2704.834 kb on + strand, within NOLOHH_13915at 2704.834 kb on + strand, within NOLOHH_13915at 2704.835 kb on - strand, within NOLOHH_13915at 2704.835 kb on - strand, within NOLOHH_13915at 2704.835 kb on - strand, within NOLOHH_13915at 2704.858 kb on + strand, within NOLOHH_13915at 2704.934 kb on - strand, within NOLOHH_13915at 2704.951 kb on + strand, within NOLOHH_13915at 2704.968 kb on - strand, within NOLOHH_13915at 2704.968 kb on - strand, within NOLOHH_13915at 2704.977 kb on - strand, within NOLOHH_13915at 2705.020 kb on + strand, within NOLOHH_13915at 2705.043 kb on - strand, within NOLOHH_13915at 2705.043 kb on - strand, within NOLOHH_13915at 2705.130 kb on - strand, within NOLOHH_13915at 2705.138 kb on + strand, within NOLOHH_13915at 2705.395 kb on - strandat 2705.397 kb on - strandat 2705.437 kb on + strandat 2705.566 kb on + strandat 2705.617 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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2,702,743 + yfeH NOLOHH_13905 0.13 +0.5
2,702,825 - yfeH NOLOHH_13905 0.21 +0.6
2,702,825 - yfeH NOLOHH_13905 0.21 -1.7
2,702,876 - yfeH NOLOHH_13905 0.26 +0.9
2,702,880 - yfeH NOLOHH_13905 0.27 -0.6
2,702,957 - yfeH NOLOHH_13905 0.34 -2.5
2,702,987 - yfeH NOLOHH_13905 0.37 -0.4
2,702,987 - yfeH NOLOHH_13905 0.37 -0.6
2,702,987 - yfeH NOLOHH_13905 0.37 -2.9
2,702,988 + yfeH NOLOHH_13905 0.37 -1.5
2,703,113 - yfeH NOLOHH_13905 0.50 -1.0
2,703,113 - yfeH NOLOHH_13905 0.50 +0.6
2,703,304 - yfeH NOLOHH_13905 0.69 +1.3
2,703,318 + yfeH NOLOHH_13905 0.70 -1.9
2,703,319 - yfeH NOLOHH_13905 0.70 -0.1
2,703,402 - yfeH NOLOHH_13905 0.79 -0.7
2,703,440 - yfeH NOLOHH_13905 0.83 -0.2
2,703,473 - yfeH NOLOHH_13905 0.86 +1.2
2,703,473 - yfeH NOLOHH_13905 0.86 +0.9
2,703,725 + -1.0
2,703,879 + yfeR NOLOHH_13910 0.19 +0.4
2,703,879 + yfeR NOLOHH_13910 0.19 -0.7
2,704,246 + yfeR NOLOHH_13910 0.59 +1.4
2,704,246 + yfeR NOLOHH_13910 0.59 +1.5
2,704,246 + yfeR NOLOHH_13910 0.59 +1.3
2,704,246 + yfeR NOLOHH_13910 0.59 +0.3
2,704,247 - yfeR NOLOHH_13910 0.59 -2.7
2,704,250 + yfeR NOLOHH_13910 0.59 -1.3
2,704,250 + yfeR NOLOHH_13910 0.59 -0.7
2,704,265 + yfeR NOLOHH_13910 0.61 -0.3
2,704,345 - yfeR NOLOHH_13910 0.69 -2.6
2,704,357 - yfeR NOLOHH_13910 0.71 +1.1
2,704,422 + yfeR NOLOHH_13910 0.78 +1.2
2,704,568 + -1.8
2,704,568 + +0.1
2,704,568 + -0.5
2,704,619 - +1.3
2,704,625 + -2.2
2,704,625 + +0.5
2,704,626 - +3.6
2,704,627 + +0.8
2,704,627 + -1.1
2,704,627 + -0.1
2,704,628 - -0.5
2,704,628 - +2.5
2,704,691 - -1.4
2,704,691 - -0.1
2,704,760 + NOLOHH_13915 0.12 -1.7
2,704,760 + NOLOHH_13915 0.12 +0.9
2,704,834 + NOLOHH_13915 0.22 -0.0
2,704,834 + NOLOHH_13915 0.22 +0.8
2,704,835 - NOLOHH_13915 0.22 -0.1
2,704,835 - NOLOHH_13915 0.22 +1.5
2,704,835 - NOLOHH_13915 0.22 +0.0
2,704,858 + NOLOHH_13915 0.25 +0.5
2,704,934 - NOLOHH_13915 0.35 -2.4
2,704,951 + NOLOHH_13915 0.37 -0.7
2,704,968 - NOLOHH_13915 0.39 +0.3
2,704,968 - NOLOHH_13915 0.39 -0.5
2,704,977 - NOLOHH_13915 0.40 +1.6
2,705,020 + NOLOHH_13915 0.46 +1.2
2,705,043 - NOLOHH_13915 0.49 +0.4
2,705,043 - NOLOHH_13915 0.49 +0.5
2,705,130 - NOLOHH_13915 0.60 +0.4
2,705,138 + NOLOHH_13915 0.61 -2.3
2,705,395 - +0.4
2,705,397 - +0.2
2,705,437 + -0.2
2,705,566 + +1.0
2,705,617 + +0.9

Or see this region's nucleotide sequence