Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhaA and rhaD are separated by 241 nucleotides rhaD and rhaM are separated by 9 nucleotides rhaM and frvA are separated by 312 nucleotides
NOLOHH_06030: rhaA - L-rhamnose isomerase, at 1,132,735 to 1,133,994
rhaA
NOLOHH_06035: rhaD - rhamnulose-1-phosphate aldolase, at 1,134,236 to 1,135,060
rhaD
NOLOHH_06040: rhaM - L-rhamnose mutarotase, at 1,135,070 to 1,135,384
rhaM
NOLOHH_06045: frvA - PTS fructose transporter subunit IIA, at 1,135,697 to 1,136,143
frvA
Position (kb) 1134
1135
1136 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1133.246 kb on - strand, within rhaA at 1133.310 kb on + strand, within rhaA at 1133.311 kb on - strand, within rhaA at 1133.311 kb on - strand, within rhaA at 1133.382 kb on - strand, within rhaA at 1133.382 kb on - strand, within rhaA at 1133.444 kb on - strand, within rhaA at 1133.444 kb on - strand, within rhaA at 1133.467 kb on + strand, within rhaA at 1133.467 kb on + strand, within rhaA at 1133.468 kb on - strand, within rhaA at 1133.468 kb on - strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.627 kb on + strand, within rhaA at 1133.627 kb on + strand, within rhaA at 1133.628 kb on - strand, within rhaA at 1133.628 kb on - strand, within rhaA at 1133.727 kb on + strand, within rhaA at 1133.727 kb on + strand, within rhaA at 1133.757 kb on + strand, within rhaA at 1133.758 kb on - strand, within rhaA at 1133.803 kb on - strand, within rhaA at 1133.839 kb on + strand, within rhaA at 1133.840 kb on - strand, within rhaA at 1133.906 kb on - strand at 1133.906 kb on - strand at 1133.963 kb on - strand at 1134.104 kb on + strand at 1134.104 kb on + strand at 1134.104 kb on + strand at 1134.104 kb on + strand at 1134.105 kb on - strand at 1134.172 kb on - strand at 1134.201 kb on + strand at 1134.201 kb on + strand at 1134.201 kb on + strand at 1134.202 kb on - strand at 1134.215 kb on + strand at 1134.216 kb on - strand at 1134.221 kb on - strand at 1134.368 kb on + strand, within rhaD at 1134.369 kb on - strand, within rhaD at 1134.370 kb on + strand, within rhaD at 1134.370 kb on + strand, within rhaD at 1134.371 kb on - strand, within rhaD at 1134.399 kb on - strand, within rhaD at 1134.399 kb on - strand, within rhaD at 1134.400 kb on + strand, within rhaD at 1134.401 kb on - strand, within rhaD at 1134.427 kb on - strand, within rhaD at 1134.436 kb on + strand, within rhaD at 1134.436 kb on + strand, within rhaD at 1134.436 kb on + strand, within rhaD at 1134.437 kb on - strand, within rhaD at 1134.437 kb on - strand, within rhaD at 1134.437 kb on - strand, within rhaD at 1134.446 kb on - strand, within rhaD at 1134.499 kb on + strand, within rhaD at 1134.499 kb on + strand, within rhaD at 1134.499 kb on + strand, within rhaD at 1134.500 kb on - strand, within rhaD at 1134.504 kb on + strand, within rhaD at 1134.505 kb on - strand, within rhaD at 1134.514 kb on - strand, within rhaD at 1134.544 kb on + strand, within rhaD at 1134.544 kb on + strand, within rhaD at 1134.544 kb on + strand, within rhaD at 1134.545 kb on - strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.689 kb on + strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.690 kb on - strand, within rhaD at 1134.693 kb on + strand, within rhaD at 1134.693 kb on + strand, within rhaD at 1134.693 kb on + strand, within rhaD at 1134.694 kb on - strand, within rhaD at 1134.694 kb on - strand, within rhaD at 1134.718 kb on + strand, within rhaD at 1134.759 kb on + strand, within rhaD at 1134.760 kb on - strand, within rhaD at 1134.760 kb on - strand, within rhaD at 1134.915 kb on + strand, within rhaD at 1134.945 kb on + strand, within rhaD at 1134.946 kb on - strand, within rhaD at 1134.946 kb on - strand, within rhaD at 1134.946 kb on - strand, within rhaD at 1134.946 kb on - strand, within rhaD at 1134.946 kb on - strand, within rhaD at 1134.946 kb on - strand, within rhaD at 1134.946 kb on - strand, within rhaD at 1134.948 kb on + strand, within rhaD at 1134.949 kb on - strand, within rhaD at 1135.058 kb on + strand at 1135.059 kb on - strand at 1135.186 kb on + strand, within rhaM at 1135.187 kb on - strand, within rhaM at 1135.187 kb on - strand, within rhaM at 1135.187 kb on - strand, within rhaM at 1135.190 kb on + strand, within rhaM at 1135.191 kb on - strand, within rhaM at 1135.200 kb on - strand, within rhaM at 1135.216 kb on + strand, within rhaM at 1135.304 kb on + strand, within rhaM at 1135.304 kb on + strand, within rhaM at 1135.304 kb on + strand, within rhaM at 1135.304 kb on + strand, within rhaM at 1135.304 kb on + strand, within rhaM at 1135.305 kb on - strand, within rhaM at 1135.305 kb on - strand, within rhaM at 1135.305 kb on - strand, within rhaM at 1135.305 kb on - strand, within rhaM at 1135.305 kb on - strand, within rhaM at 1135.305 kb on - strand, within rhaM at 1135.306 kb on + strand, within rhaM at 1135.307 kb on - strand, within rhaM at 1135.307 kb on - strand, within rhaM at 1135.307 kb on - strand, within rhaM at 1135.382 kb on + strand at 1135.451 kb on + strand at 1135.452 kb on - strand at 1135.463 kb on + strand at 1135.483 kb on + strand at 1135.484 kb on - strand at 1135.484 kb on - strand at 1135.484 kb on - strand at 1135.550 kb on + strand at 1135.565 kb on + strand at 1135.574 kb on + strand at 1135.670 kb on + strand at 1135.677 kb on + strand at 1135.677 kb on + strand at 1135.708 kb on + strand at 1135.708 kb on + strand at 1135.709 kb on - strand at 1135.721 kb on - strand at 1135.721 kb on - strand at 1135.751 kb on + strand, within frvA at 1135.752 kb on - strand, within frvA at 1135.799 kb on - strand, within frvA at 1135.855 kb on + strand, within frvA at 1135.855 kb on + strand, within frvA at 1135.855 kb on + strand, within frvA at 1135.856 kb on - strand, within frvA at 1135.892 kb on - strand, within frvA at 1135.923 kb on + strand, within frvA at 1135.946 kb on - strand, within frvA at 1136.041 kb on + strand, within frvA at 1136.042 kb on - strand, within frvA at 1136.060 kb on - strand, within frvA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 1,133,246 - rhaA NOLOHH_06030 0.41 -4.1 1,133,310 + rhaA NOLOHH_06030 0.46 -1.9 1,133,311 - rhaA NOLOHH_06030 0.46 -4.0 1,133,311 - rhaA NOLOHH_06030 0.46 -4.8 1,133,382 - rhaA NOLOHH_06030 0.51 -2.1 1,133,382 - rhaA NOLOHH_06030 0.51 -6.1 1,133,444 - rhaA NOLOHH_06030 0.56 -3.7 1,133,444 - rhaA NOLOHH_06030 0.56 -4.9 1,133,467 + rhaA NOLOHH_06030 0.58 -4.4 1,133,467 + rhaA NOLOHH_06030 0.58 -4.4 1,133,468 - rhaA NOLOHH_06030 0.58 -3.3 1,133,468 - rhaA NOLOHH_06030 0.58 -2.9 1,133,569 + rhaA NOLOHH_06030 0.66 -2.8 1,133,569 + rhaA NOLOHH_06030 0.66 -3.6 1,133,569 + rhaA NOLOHH_06030 0.66 -1.6 1,133,569 + rhaA NOLOHH_06030 0.66 -3.8 1,133,569 + rhaA NOLOHH_06030 0.66 -1.6 1,133,569 + rhaA NOLOHH_06030 0.66 -1.1 1,133,569 + rhaA NOLOHH_06030 0.66 -4.4 1,133,569 + rhaA NOLOHH_06030 0.66 -2.4 1,133,570 - rhaA NOLOHH_06030 0.66 -4.6 1,133,570 - rhaA NOLOHH_06030 0.66 -5.3 1,133,570 - rhaA NOLOHH_06030 0.66 -3.7 1,133,570 - rhaA NOLOHH_06030 0.66 -4.5 1,133,570 - rhaA NOLOHH_06030 0.66 -2.1 1,133,627 + rhaA NOLOHH_06030 0.71 -4.8 1,133,627 + rhaA NOLOHH_06030 0.71 -4.5 1,133,628 - rhaA NOLOHH_06030 0.71 -4.1 1,133,628 - rhaA NOLOHH_06030 0.71 -4.3 1,133,727 + rhaA NOLOHH_06030 0.79 -3.0 1,133,727 + rhaA NOLOHH_06030 0.79 -4.2 1,133,757 + rhaA NOLOHH_06030 0.81 -4.0 1,133,758 - rhaA NOLOHH_06030 0.81 -5.3 1,133,803 - rhaA NOLOHH_06030 0.85 -2.8 1,133,839 + rhaA NOLOHH_06030 0.88 -4.1 1,133,840 - rhaA NOLOHH_06030 0.88 -3.9 1,133,906 - -3.1 1,133,906 - -2.0 1,133,963 - -1.5 1,134,104 + -3.2 1,134,104 + -1.1 1,134,104 + -4.5 1,134,104 + -3.9 1,134,105 - -4.5 1,134,172 - -3.3 1,134,201 + -1.3 1,134,201 + -2.0 1,134,201 + -5.7 1,134,202 - -0.5 1,134,215 + -3.0 1,134,216 - -6.0 1,134,221 - -5.1 1,134,368 + rhaD NOLOHH_06035 0.16 -2.6 1,134,369 - rhaD NOLOHH_06035 0.16 -5.4 1,134,370 + rhaD NOLOHH_06035 0.16 -4.8 1,134,370 + rhaD NOLOHH_06035 0.16 -3.6 1,134,371 - rhaD NOLOHH_06035 0.16 -5.1 1,134,399 - rhaD NOLOHH_06035 0.20 -5.5 1,134,399 - rhaD NOLOHH_06035 0.20 -3.7 1,134,400 + rhaD NOLOHH_06035 0.20 -1.6 1,134,401 - rhaD NOLOHH_06035 0.20 -4.7 1,134,427 - rhaD NOLOHH_06035 0.23 -4.8 1,134,436 + rhaD NOLOHH_06035 0.24 -1.2 1,134,436 + rhaD NOLOHH_06035 0.24 -5.9 1,134,436 + rhaD NOLOHH_06035 0.24 -4.4 1,134,437 - rhaD NOLOHH_06035 0.24 -5.7 1,134,437 - rhaD NOLOHH_06035 0.24 -4.9 1,134,437 - rhaD NOLOHH_06035 0.24 -4.1 1,134,446 - rhaD NOLOHH_06035 0.25 -4.6 1,134,499 + rhaD NOLOHH_06035 0.32 -4.8 1,134,499 + rhaD NOLOHH_06035 0.32 -4.1 1,134,499 + rhaD NOLOHH_06035 0.32 -5.3 1,134,500 - rhaD NOLOHH_06035 0.32 -4.4 1,134,504 + rhaD NOLOHH_06035 0.32 -3.1 1,134,505 - rhaD NOLOHH_06035 0.33 -1.7 1,134,514 - rhaD NOLOHH_06035 0.34 -3.3 1,134,544 + rhaD NOLOHH_06035 0.37 -3.6 1,134,544 + rhaD NOLOHH_06035 0.37 -1.0 1,134,544 + rhaD NOLOHH_06035 0.37 -3.6 1,134,545 - rhaD NOLOHH_06035 0.37 -1.5 1,134,689 + rhaD NOLOHH_06035 0.55 -2.7 1,134,689 + rhaD NOLOHH_06035 0.55 -2.5 1,134,689 + rhaD NOLOHH_06035 0.55 -4.4 1,134,689 + rhaD NOLOHH_06035 0.55 -3.8 1,134,689 + rhaD NOLOHH_06035 0.55 -3.2 1,134,689 + rhaD NOLOHH_06035 0.55 -4.1 1,134,689 + rhaD NOLOHH_06035 0.55 -5.7 1,134,689 + rhaD NOLOHH_06035 0.55 -6.1 1,134,689 + rhaD NOLOHH_06035 0.55 -2.2 1,134,689 + rhaD NOLOHH_06035 0.55 -4.8 1,134,690 - rhaD NOLOHH_06035 0.55 -3.5 1,134,690 - rhaD NOLOHH_06035 0.55 -4.1 1,134,690 - rhaD NOLOHH_06035 0.55 -5.6 1,134,690 - rhaD NOLOHH_06035 0.55 -4.6 1,134,690 - rhaD NOLOHH_06035 0.55 -2.7 1,134,690 - rhaD NOLOHH_06035 0.55 -6.2 1,134,690 - rhaD NOLOHH_06035 0.55 -3.5 1,134,690 - rhaD NOLOHH_06035 0.55 -2.6 1,134,690 - rhaD NOLOHH_06035 0.55 -4.5 1,134,690 - rhaD NOLOHH_06035 0.55 -3.8 1,134,690 - rhaD NOLOHH_06035 0.55 -5.7 1,134,690 - rhaD NOLOHH_06035 0.55 -4.5 1,134,690 - rhaD NOLOHH_06035 0.55 -4.3 1,134,693 + rhaD NOLOHH_06035 0.55 -0.8 1,134,693 + rhaD NOLOHH_06035 0.55 -1.7 1,134,693 + rhaD NOLOHH_06035 0.55 -5.0 1,134,694 - rhaD NOLOHH_06035 0.56 -4.9 1,134,694 - rhaD NOLOHH_06035 0.56 -2.2 1,134,718 + rhaD NOLOHH_06035 0.58 -3.6 1,134,759 + rhaD NOLOHH_06035 0.63 -4.4 1,134,760 - rhaD NOLOHH_06035 0.64 -4.2 1,134,760 - rhaD NOLOHH_06035 0.64 -2.1 1,134,915 + rhaD NOLOHH_06035 0.82 -5.1 1,134,945 + rhaD NOLOHH_06035 0.86 -3.7 1,134,946 - rhaD NOLOHH_06035 0.86 -3.9 1,134,946 - rhaD NOLOHH_06035 0.86 -0.9 1,134,946 - rhaD NOLOHH_06035 0.86 -2.4 1,134,946 - rhaD NOLOHH_06035 0.86 -5.5 1,134,946 - rhaD NOLOHH_06035 0.86 -3.8 1,134,946 - rhaD NOLOHH_06035 0.86 -5.7 1,134,946 - rhaD NOLOHH_06035 0.86 -4.2 1,134,948 + rhaD NOLOHH_06035 0.86 -5.2 1,134,949 - rhaD NOLOHH_06035 0.86 -5.1 1,135,058 + -3.3 1,135,059 - -2.5 1,135,186 + rhaM NOLOHH_06040 0.37 -2.3 1,135,187 - rhaM NOLOHH_06040 0.37 -3.7 1,135,187 - rhaM NOLOHH_06040 0.37 -3.2 1,135,187 - rhaM NOLOHH_06040 0.37 -1.7 1,135,190 + rhaM NOLOHH_06040 0.38 -3.6 1,135,191 - rhaM NOLOHH_06040 0.38 -1.8 1,135,200 - rhaM NOLOHH_06040 0.41 +0.8 1,135,216 + rhaM NOLOHH_06040 0.46 -1.5 1,135,304 + rhaM NOLOHH_06040 0.74 -3.2 1,135,304 + rhaM NOLOHH_06040 0.74 -5.4 1,135,304 + rhaM NOLOHH_06040 0.74 -4.8 1,135,304 + rhaM NOLOHH_06040 0.74 -2.5 1,135,304 + rhaM NOLOHH_06040 0.74 -2.7 1,135,305 - rhaM NOLOHH_06040 0.75 -3.5 1,135,305 - rhaM NOLOHH_06040 0.75 -3.5 1,135,305 - rhaM NOLOHH_06040 0.75 -1.3 1,135,305 - rhaM NOLOHH_06040 0.75 -3.4 1,135,305 - rhaM NOLOHH_06040 0.75 -4.0 1,135,305 - rhaM NOLOHH_06040 0.75 -1.6 1,135,306 + rhaM NOLOHH_06040 0.75 -2.5 1,135,307 - rhaM NOLOHH_06040 0.75 -1.3 1,135,307 - rhaM NOLOHH_06040 0.75 -4.4 1,135,307 - rhaM NOLOHH_06040 0.75 -4.6 1,135,382 + -3.5 1,135,451 + -2.2 1,135,452 - -1.0 1,135,463 + +0.7 1,135,483 + +0.5 1,135,484 - +0.3 1,135,484 - +0.1 1,135,484 - +0.4 1,135,550 + -1.3 1,135,565 + +0.5 1,135,574 + +1.1 1,135,670 + -0.3 1,135,677 + -1.6 1,135,677 + +0.5 1,135,708 + -0.4 1,135,708 + -0.7 1,135,709 - +0.4 1,135,721 - -0.7 1,135,721 - +0.5 1,135,751 + frvA NOLOHH_06045 0.12 +1.1 1,135,752 - frvA NOLOHH_06045 0.12 +1.6 1,135,799 - frvA NOLOHH_06045 0.23 +0.5 1,135,855 + frvA NOLOHH_06045 0.35 -0.5 1,135,855 + frvA NOLOHH_06045 0.35 -0.1 1,135,855 + frvA NOLOHH_06045 0.35 +0.9 1,135,856 - frvA NOLOHH_06045 0.36 +0.1 1,135,892 - frvA NOLOHH_06045 0.44 -1.0 1,135,923 + frvA NOLOHH_06045 0.51 +1.3 1,135,946 - frvA NOLOHH_06045 0.56 +1.5 1,136,041 + frvA NOLOHH_06045 0.77 -0.5 1,136,042 - frvA NOLOHH_06045 0.77 -1.3 1,136,060 - frvA NOLOHH_06045 0.81 -0.3
Or see this region's nucleotide sequence