Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhaS and rhaB are separated by 287 nucleotides rhaB and rhaA overlap by 4 nucleotides
NOLOHH_06020: rhaS - HTH-type transcriptional activator RhaS, at 1,130,145 to 1,130,981
rhaS
NOLOHH_06025: rhaB - rhamnulokinase, at 1,131,269 to 1,132,738
rhaB
NOLOHH_06030: rhaA - L-rhamnose isomerase, at 1,132,735 to 1,133,994
rhaA
Position (kb) 1131
1132
1133 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1130.287 kb on - strand, within rhaS at 1130.358 kb on - strand, within rhaS at 1130.370 kb on + strand, within rhaS at 1130.370 kb on + strand, within rhaS at 1130.370 kb on + strand, within rhaS at 1130.370 kb on + strand, within rhaS at 1130.371 kb on - strand, within rhaS at 1130.508 kb on - strand, within rhaS at 1130.523 kb on + strand, within rhaS at 1130.524 kb on - strand, within rhaS at 1130.524 kb on - strand, within rhaS at 1130.524 kb on - strand, within rhaS at 1130.524 kb on - strand, within rhaS at 1130.532 kb on - strand, within rhaS at 1130.622 kb on + strand, within rhaS at 1130.622 kb on + strand, within rhaS at 1130.622 kb on + strand, within rhaS at 1130.756 kb on + strand, within rhaS at 1130.756 kb on + strand, within rhaS at 1130.756 kb on + strand, within rhaS at 1130.757 kb on - strand, within rhaS at 1130.764 kb on + strand, within rhaS at 1130.764 kb on + strand, within rhaS at 1130.764 kb on + strand, within rhaS at 1130.764 kb on + strand, within rhaS at 1130.816 kb on + strand, within rhaS at 1130.817 kb on - strand, within rhaS at 1130.817 kb on - strand, within rhaS at 1130.818 kb on + strand, within rhaS at 1130.966 kb on + strand at 1130.966 kb on + strand at 1130.966 kb on + strand at 1130.966 kb on + strand at 1130.966 kb on + strand at 1130.967 kb on - strand at 1130.967 kb on - strand at 1130.967 kb on - strand at 1130.967 kb on - strand at 1130.967 kb on - strand at 1130.967 kb on - strand at 1130.967 kb on - strand at 1130.970 kb on + strand at 1130.970 kb on + strand at 1130.971 kb on - strand at 1130.971 kb on - strand at 1130.974 kb on - strand at 1130.974 kb on - strand at 1130.982 kb on - strand at 1131.014 kb on + strand at 1131.015 kb on - strand at 1131.037 kb on + strand at 1131.038 kb on - strand at 1131.088 kb on + strand at 1131.089 kb on - strand at 1131.268 kb on + strand at 1131.268 kb on + strand at 1131.269 kb on - strand at 1131.269 kb on - strand at 1131.410 kb on + strand at 1131.460 kb on - strand, within rhaB at 1131.460 kb on - strand, within rhaB at 1131.460 kb on - strand, within rhaB at 1131.508 kb on + strand, within rhaB at 1131.597 kb on + strand, within rhaB at 1131.598 kb on - strand, within rhaB at 1131.635 kb on - strand, within rhaB at 1131.638 kb on + strand, within rhaB at 1131.639 kb on - strand, within rhaB at 1131.673 kb on + strand, within rhaB at 1131.680 kb on + strand, within rhaB at 1131.680 kb on + strand, within rhaB at 1131.688 kb on - strand, within rhaB at 1131.718 kb on + strand, within rhaB at 1131.760 kb on + strand, within rhaB at 1131.760 kb on + strand, within rhaB at 1131.761 kb on - strand, within rhaB at 1131.761 kb on - strand, within rhaB at 1131.761 kb on - strand, within rhaB at 1131.795 kb on - strand, within rhaB at 1131.795 kb on - strand, within rhaB at 1131.826 kb on + strand, within rhaB at 1131.918 kb on + strand, within rhaB at 1131.918 kb on + strand, within rhaB at 1131.918 kb on + strand, within rhaB at 1131.918 kb on + strand, within rhaB at 1131.918 kb on + strand, within rhaB at 1131.918 kb on + strand, within rhaB at 1131.919 kb on - strand, within rhaB at 1131.919 kb on - strand, within rhaB at 1131.919 kb on - strand, within rhaB at 1132.028 kb on + strand, within rhaB at 1132.029 kb on - strand, within rhaB at 1132.081 kb on + strand, within rhaB at 1132.081 kb on + strand, within rhaB at 1132.082 kb on - strand, within rhaB at 1132.168 kb on - strand, within rhaB at 1132.286 kb on - strand, within rhaB at 1132.403 kb on + strand, within rhaB at 1132.404 kb on - strand, within rhaB at 1132.462 kb on + strand, within rhaB at 1132.463 kb on - strand, within rhaB at 1132.503 kb on + strand, within rhaB at 1132.503 kb on + strand, within rhaB at 1132.503 kb on + strand, within rhaB at 1132.503 kb on + strand, within rhaB at 1132.504 kb on - strand, within rhaB at 1132.581 kb on + strand, within rhaB at 1132.582 kb on - strand, within rhaB at 1132.664 kb on - strand at 1132.688 kb on + strand at 1132.688 kb on + strand at 1132.688 kb on + strand at 1132.688 kb on + strand at 1132.689 kb on - strand at 1132.689 kb on - strand at 1132.689 kb on - strand at 1132.689 kb on - strand at 1132.689 kb on - strand at 1132.689 kb on - strand at 1132.689 kb on - strand at 1132.708 kb on + strand at 1132.708 kb on + strand at 1132.709 kb on - strand at 1132.709 kb on - strand at 1132.923 kb on + strand, within rhaA at 1132.923 kb on + strand, within rhaA at 1132.923 kb on + strand, within rhaA at 1132.924 kb on - strand, within rhaA at 1132.927 kb on + strand, within rhaA at 1132.958 kb on + strand, within rhaA at 1132.958 kb on + strand, within rhaA at 1132.958 kb on + strand, within rhaA at 1132.958 kb on + strand, within rhaA at 1132.958 kb on + strand, within rhaA at 1132.959 kb on - strand, within rhaA at 1132.959 kb on - strand, within rhaA at 1132.963 kb on - strand, within rhaA at 1132.980 kb on + strand, within rhaA at 1133.011 kb on - strand, within rhaA at 1133.015 kb on + strand, within rhaA at 1133.016 kb on - strand, within rhaA at 1133.026 kb on + strand, within rhaA at 1133.027 kb on - strand, within rhaA at 1133.027 kb on - strand, within rhaA at 1133.128 kb on - strand, within rhaA at 1133.170 kb on - strand, within rhaA at 1133.246 kb on - strand, within rhaA at 1133.310 kb on + strand, within rhaA at 1133.311 kb on - strand, within rhaA at 1133.311 kb on - strand, within rhaA at 1133.382 kb on - strand, within rhaA at 1133.382 kb on - strand, within rhaA at 1133.444 kb on - strand, within rhaA at 1133.444 kb on - strand, within rhaA at 1133.467 kb on + strand, within rhaA at 1133.467 kb on + strand, within rhaA at 1133.468 kb on - strand, within rhaA at 1133.468 kb on - strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.569 kb on + strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.570 kb on - strand, within rhaA at 1133.627 kb on + strand, within rhaA at 1133.627 kb on + strand, within rhaA at 1133.628 kb on - strand, within rhaA at 1133.628 kb on - strand, within rhaA at 1133.727 kb on + strand, within rhaA at 1133.727 kb on + strand, within rhaA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 1,130,287 - rhaS NOLOHH_06020 0.17 -2.5 1,130,358 - rhaS NOLOHH_06020 0.25 -3.1 1,130,370 + rhaS NOLOHH_06020 0.27 -3.9 1,130,370 + rhaS NOLOHH_06020 0.27 -0.0 1,130,370 + rhaS NOLOHH_06020 0.27 -4.2 1,130,370 + rhaS NOLOHH_06020 0.27 -5.8 1,130,371 - rhaS NOLOHH_06020 0.27 -2.5 1,130,508 - rhaS NOLOHH_06020 0.43 -0.4 1,130,523 + rhaS NOLOHH_06020 0.45 -3.3 1,130,524 - rhaS NOLOHH_06020 0.45 -2.4 1,130,524 - rhaS NOLOHH_06020 0.45 -3.1 1,130,524 - rhaS NOLOHH_06020 0.45 -4.0 1,130,524 - rhaS NOLOHH_06020 0.45 -2.6 1,130,532 - rhaS NOLOHH_06020 0.46 -4.5 1,130,622 + rhaS NOLOHH_06020 0.57 -2.3 1,130,622 + rhaS NOLOHH_06020 0.57 -2.3 1,130,622 + rhaS NOLOHH_06020 0.57 -5.3 1,130,756 + rhaS NOLOHH_06020 0.73 -4.4 1,130,756 + rhaS NOLOHH_06020 0.73 -1.5 1,130,756 + rhaS NOLOHH_06020 0.73 -1.0 1,130,757 - rhaS NOLOHH_06020 0.73 -5.0 1,130,764 + rhaS NOLOHH_06020 0.74 -1.5 1,130,764 + rhaS NOLOHH_06020 0.74 -4.8 1,130,764 + rhaS NOLOHH_06020 0.74 -5.1 1,130,764 + rhaS NOLOHH_06020 0.74 -4.4 1,130,816 + rhaS NOLOHH_06020 0.80 -4.1 1,130,817 - rhaS NOLOHH_06020 0.80 -1.6 1,130,817 - rhaS NOLOHH_06020 0.80 -1.8 1,130,818 + rhaS NOLOHH_06020 0.80 -4.0 1,130,966 + -3.9 1,130,966 + -5.8 1,130,966 + -5.3 1,130,966 + -4.3 1,130,966 + -1.1 1,130,967 - -1.8 1,130,967 - -2.5 1,130,967 - -4.4 1,130,967 - -5.0 1,130,967 - -4.0 1,130,967 - -6.5 1,130,967 - -4.4 1,130,970 + -2.6 1,130,970 + -4.5 1,130,971 - -3.9 1,130,971 - -5.0 1,130,974 - -3.0 1,130,974 - -6.0 1,130,982 - -3.0 1,131,014 + -2.4 1,131,015 - -0.6 1,131,037 + -1.5 1,131,038 - -2.0 1,131,088 + -1.3 1,131,089 - -3.0 1,131,268 + -5.7 1,131,268 + -1.8 1,131,269 - -3.3 1,131,269 - -1.0 1,131,410 + -5.7 1,131,460 - rhaB NOLOHH_06025 0.13 -3.3 1,131,460 - rhaB NOLOHH_06025 0.13 -4.7 1,131,460 - rhaB NOLOHH_06025 0.13 -2.9 1,131,508 + rhaB NOLOHH_06025 0.16 -0.2 1,131,597 + rhaB NOLOHH_06025 0.22 -2.7 1,131,598 - rhaB NOLOHH_06025 0.22 -5.2 1,131,635 - rhaB NOLOHH_06025 0.25 -2.9 1,131,638 + rhaB NOLOHH_06025 0.25 -2.6 1,131,639 - rhaB NOLOHH_06025 0.25 -3.2 1,131,673 + rhaB NOLOHH_06025 0.27 -2.5 1,131,680 + rhaB NOLOHH_06025 0.28 -2.8 1,131,680 + rhaB NOLOHH_06025 0.28 -4.1 1,131,688 - rhaB NOLOHH_06025 0.29 -3.2 1,131,718 + rhaB NOLOHH_06025 0.31 -3.4 1,131,760 + rhaB NOLOHH_06025 0.33 -2.5 1,131,760 + rhaB NOLOHH_06025 0.33 -1.2 1,131,761 - rhaB NOLOHH_06025 0.33 -4.0 1,131,761 - rhaB NOLOHH_06025 0.33 -5.1 1,131,761 - rhaB NOLOHH_06025 0.33 -4.2 1,131,795 - rhaB NOLOHH_06025 0.36 -5.1 1,131,795 - rhaB NOLOHH_06025 0.36 -1.5 1,131,826 + rhaB NOLOHH_06025 0.38 -4.8 1,131,918 + rhaB NOLOHH_06025 0.44 -2.6 1,131,918 + rhaB NOLOHH_06025 0.44 -1.3 1,131,918 + rhaB NOLOHH_06025 0.44 -5.0 1,131,918 + rhaB NOLOHH_06025 0.44 -4.6 1,131,918 + rhaB NOLOHH_06025 0.44 -3.6 1,131,918 + rhaB NOLOHH_06025 0.44 -2.9 1,131,919 - rhaB NOLOHH_06025 0.44 -3.4 1,131,919 - rhaB NOLOHH_06025 0.44 -5.0 1,131,919 - rhaB NOLOHH_06025 0.44 -3.6 1,132,028 + rhaB NOLOHH_06025 0.52 -6.2 1,132,029 - rhaB NOLOHH_06025 0.52 -4.2 1,132,081 + rhaB NOLOHH_06025 0.55 -2.9 1,132,081 + rhaB NOLOHH_06025 0.55 -5.0 1,132,082 - rhaB NOLOHH_06025 0.55 -5.1 1,132,168 - rhaB NOLOHH_06025 0.61 -4.3 1,132,286 - rhaB NOLOHH_06025 0.69 -3.5 1,132,403 + rhaB NOLOHH_06025 0.77 -5.9 1,132,404 - rhaB NOLOHH_06025 0.77 -1.3 1,132,462 + rhaB NOLOHH_06025 0.81 -4.8 1,132,463 - rhaB NOLOHH_06025 0.81 -4.0 1,132,503 + rhaB NOLOHH_06025 0.84 -3.7 1,132,503 + rhaB NOLOHH_06025 0.84 -5.3 1,132,503 + rhaB NOLOHH_06025 0.84 -4.0 1,132,503 + rhaB NOLOHH_06025 0.84 -5.0 1,132,504 - rhaB NOLOHH_06025 0.84 -2.7 1,132,581 + rhaB NOLOHH_06025 0.89 -5.2 1,132,582 - rhaB NOLOHH_06025 0.89 -2.2 1,132,664 - -4.1 1,132,688 + -2.2 1,132,688 + -2.5 1,132,688 + -5.1 1,132,688 + -2.5 1,132,689 - -2.4 1,132,689 - -4.3 1,132,689 - -2.4 1,132,689 - -4.1 1,132,689 - -5.3 1,132,689 - -3.5 1,132,689 - -4.6 1,132,708 + -2.6 1,132,708 + -1.4 1,132,709 - -2.4 1,132,709 - -5.1 1,132,923 + rhaA NOLOHH_06030 0.15 -5.3 1,132,923 + rhaA NOLOHH_06030 0.15 -5.2 1,132,923 + rhaA NOLOHH_06030 0.15 -5.1 1,132,924 - rhaA NOLOHH_06030 0.15 -5.0 1,132,927 + rhaA NOLOHH_06030 0.15 -2.3 1,132,958 + rhaA NOLOHH_06030 0.18 -4.8 1,132,958 + rhaA NOLOHH_06030 0.18 -2.5 1,132,958 + rhaA NOLOHH_06030 0.18 -2.0 1,132,958 + rhaA NOLOHH_06030 0.18 -1.1 1,132,958 + rhaA NOLOHH_06030 0.18 -2.2 1,132,959 - rhaA NOLOHH_06030 0.18 -1.8 1,132,959 - rhaA NOLOHH_06030 0.18 -6.1 1,132,963 - rhaA NOLOHH_06030 0.18 -5.1 1,132,980 + rhaA NOLOHH_06030 0.19 -2.6 1,133,011 - rhaA NOLOHH_06030 0.22 -0.7 1,133,015 + rhaA NOLOHH_06030 0.22 -4.8 1,133,016 - rhaA NOLOHH_06030 0.22 -4.4 1,133,026 + rhaA NOLOHH_06030 0.23 -3.6 1,133,027 - rhaA NOLOHH_06030 0.23 -4.4 1,133,027 - rhaA NOLOHH_06030 0.23 -5.3 1,133,128 - rhaA NOLOHH_06030 0.31 -3.5 1,133,170 - rhaA NOLOHH_06030 0.35 -3.1 1,133,246 - rhaA NOLOHH_06030 0.41 -4.1 1,133,310 + rhaA NOLOHH_06030 0.46 -1.9 1,133,311 - rhaA NOLOHH_06030 0.46 -4.0 1,133,311 - rhaA NOLOHH_06030 0.46 -4.8 1,133,382 - rhaA NOLOHH_06030 0.51 -2.1 1,133,382 - rhaA NOLOHH_06030 0.51 -6.1 1,133,444 - rhaA NOLOHH_06030 0.56 -3.7 1,133,444 - rhaA NOLOHH_06030 0.56 -4.9 1,133,467 + rhaA NOLOHH_06030 0.58 -4.4 1,133,467 + rhaA NOLOHH_06030 0.58 -4.4 1,133,468 - rhaA NOLOHH_06030 0.58 -3.3 1,133,468 - rhaA NOLOHH_06030 0.58 -2.9 1,133,569 + rhaA NOLOHH_06030 0.66 -2.8 1,133,569 + rhaA NOLOHH_06030 0.66 -3.6 1,133,569 + rhaA NOLOHH_06030 0.66 -1.6 1,133,569 + rhaA NOLOHH_06030 0.66 -3.8 1,133,569 + rhaA NOLOHH_06030 0.66 -1.6 1,133,569 + rhaA NOLOHH_06030 0.66 -1.1 1,133,569 + rhaA NOLOHH_06030 0.66 -4.4 1,133,569 + rhaA NOLOHH_06030 0.66 -2.4 1,133,570 - rhaA NOLOHH_06030 0.66 -4.6 1,133,570 - rhaA NOLOHH_06030 0.66 -5.3 1,133,570 - rhaA NOLOHH_06030 0.66 -3.7 1,133,570 - rhaA NOLOHH_06030 0.66 -4.5 1,133,570 - rhaA NOLOHH_06030 0.66 -2.1 1,133,627 + rhaA NOLOHH_06030 0.71 -4.8 1,133,627 + rhaA NOLOHH_06030 0.71 -4.5 1,133,628 - rhaA NOLOHH_06030 0.71 -4.1 1,133,628 - rhaA NOLOHH_06030 0.71 -4.3 1,133,727 + rhaA NOLOHH_06030 0.79 -3.0 1,133,727 + rhaA NOLOHH_06030 0.79 -4.2
Or see this region's nucleotide sequence