Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hflX and hfq are separated by 75 nucleotides hfq and miaA are separated by 85 nucleotides miaA and mutL overlap by 8 nucleotides
NOLOHH_04515: hflX - GTPase HflX, at 816,943 to 818,223
hflX
NOLOHH_04520: hfq - RNA chaperone Hfq, at 818,299 to 818,607
hfq
NOLOHH_04525: miaA - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 818,693 to 819,643
miaA
NOLOHH_04530: mutL - DNA mismatch repair endonuclease MutL, at 819,636 to 821,483
mutL
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 817.703 kb on - strand, within hflX at 817.775 kb on - strand, within hflX at 817.897 kb on - strand, within hflX at 818.051 kb on - strand, within hflX at 818.175 kb on - strand at 818.183 kb on - strand at 818.183 kb on - strand at 818.228 kb on - strand at 818.228 kb on - strand at 818.228 kb on - strand at 818.242 kb on - strand at 818.242 kb on - strand at 818.242 kb on - strand at 818.350 kb on - strand, within hfq at 818.361 kb on - strand, within hfq at 818.624 kb on - strand at 818.624 kb on - strand at 818.624 kb on - strand at 818.624 kb on - strand at 818.624 kb on - strand at 818.630 kb on - strand at 818.630 kb on - strand at 818.630 kb on - strand at 818.630 kb on - strand at 818.630 kb on - strand at 818.630 kb on - strand at 818.630 kb on - strand at 818.630 kb on - strand at 818.630 kb on - strand at 818.630 kb on - strand at 818.636 kb on - strand at 818.636 kb on - strand at 818.636 kb on - strand at 818.674 kb on - strand at 818.674 kb on - strand at 818.724 kb on - strand at 818.796 kb on - strand, within miaA at 819.409 kb on - strand, within miaA at 819.508 kb on + strand, within miaA at 819.551 kb on - strand at 819.628 kb on + strand at 819.670 kb on - strand at 819.685 kb on - strand at 819.723 kb on + strand at 819.724 kb on - strand at 819.724 kb on - strand at 819.724 kb on - strand at 819.724 kb on - strand at 819.815 kb on + strand at 819.815 kb on + strand at 819.816 kb on - strand at 819.856 kb on - strand, within mutL at 819.894 kb on + strand, within mutL at 820.015 kb on - strand, within mutL at 820.083 kb on + strand, within mutL at 820.084 kb on - strand, within mutL at 820.164 kb on - strand, within mutL at 820.271 kb on - strand, within mutL at 820.368 kb on + strand, within mutL at 820.494 kb on + strand, within mutL at 820.516 kb on + strand, within mutL at 820.516 kb on + strand, within mutL at 820.517 kb on - strand, within mutL at 820.517 kb on - strand, within mutL at 820.520 kb on + strand, within mutL at 820.520 kb on + strand, within mutL at 820.521 kb on - strand, within mutL at 820.613 kb on - strand, within mutL at 820.613 kb on - strand, within mutL
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 817,703 - hflX NOLOHH_04515 0.59 -1.8 817,775 - hflX NOLOHH_04515 0.65 -1.4 817,897 - hflX NOLOHH_04515 0.74 -0.6 818,051 - hflX NOLOHH_04515 0.86 -0.2 818,175 - +0.9 818,183 - -1.5 818,183 - -1.8 818,228 - +0.4 818,228 - +0.1 818,228 - +0.1 818,242 - +0.4 818,242 - +0.5 818,242 - -0.1 818,350 - hfq NOLOHH_04520 0.17 -0.5 818,361 - hfq NOLOHH_04520 0.20 -1.0 818,624 - +0.7 818,624 - -2.3 818,624 - -2.2 818,624 - -0.1 818,624 - -0.6 818,630 - -1.9 818,630 - -3.7 818,630 - -2.7 818,630 - +0.8 818,630 - -0.6 818,630 - -0.5 818,630 - -0.8 818,630 - +0.3 818,630 - -3.2 818,630 - -3.4 818,636 - +1.2 818,636 - -1.3 818,636 - +0.2 818,674 - -0.4 818,674 - +0.9 818,724 - +0.3 818,796 - miaA NOLOHH_04525 0.11 -0.6 819,409 - miaA NOLOHH_04525 0.75 -2.7 819,508 + miaA NOLOHH_04525 0.86 -1.9 819,551 - -2.4 819,628 + +1.2 819,670 - -0.1 819,685 - -1.7 819,723 + -2.9 819,724 - +0.3 819,724 - -0.5 819,724 - +2.1 819,724 - -0.8 819,815 + -0.1 819,815 + +1.9 819,816 - +0.2 819,856 - mutL NOLOHH_04530 0.12 +0.2 819,894 + mutL NOLOHH_04530 0.14 -2.3 820,015 - mutL NOLOHH_04530 0.21 -0.7 820,083 + mutL NOLOHH_04530 0.24 +0.8 820,084 - mutL NOLOHH_04530 0.24 -3.0 820,164 - mutL NOLOHH_04530 0.29 +0.3 820,271 - mutL NOLOHH_04530 0.34 -1.1 820,368 + mutL NOLOHH_04530 0.40 -2.4 820,494 + mutL NOLOHH_04530 0.46 -0.4 820,516 + mutL NOLOHH_04530 0.48 -1.6 820,516 + mutL NOLOHH_04530 0.48 -1.3 820,517 - mutL NOLOHH_04530 0.48 +0.6 820,517 - mutL NOLOHH_04530 0.48 -0.0 820,520 + mutL NOLOHH_04530 0.48 -1.7 820,520 + mutL NOLOHH_04530 0.48 +0.5 820,521 - mutL NOLOHH_04530 0.48 +0.4 820,613 - mutL NOLOHH_04530 0.53 -0.3 820,613 - mutL NOLOHH_04530 0.53 +0.8
Or see this region's nucleotide sequence