Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfC and yjfM are separated by 2 nucleotides yjfM and yjfL are separated by 9 nucleotides yjfL and NOLOHH_04460 are separated by 17 nucleotides NOLOHH_04460 and NOLOHH_04465 overlap by 22 nucleotides
NOLOHH_04445: yjfC - Putative acid--amine ligase YjfC, at 804,705 to 805,868
yjfC
NOLOHH_04450: yjfM - Uncharacterized protein YjfM, at 805,871 to 806,509
yjfM
NOLOHH_04455: yjfL - UPF0719 inner membrane protein YjfL, at 806,519 to 806,917
yjfL
NOLOHH_04460: NOLOHH_04460 - DUF2491 domain-containing protein, at 806,935 to 807,087
_04460
NOLOHH_04465: NOLOHH_04465 - DUF2491 domain-containing protein, at 807,066 to 807,593
_04465
Position (kb) 805
806
807 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 804.955 kb on + strand, within yjfC at 804.956 kb on - strand, within yjfC at 804.966 kb on - strand, within yjfC at 804.974 kb on - strand, within yjfC at 804.974 kb on - strand, within yjfC at 805.076 kb on + strand, within yjfC at 805.077 kb on - strand, within yjfC at 805.080 kb on - strand, within yjfC at 805.088 kb on + strand, within yjfC at 805.181 kb on + strand, within yjfC at 805.222 kb on - strand, within yjfC at 805.255 kb on + strand, within yjfC at 805.255 kb on + strand, within yjfC at 805.256 kb on - strand, within yjfC at 805.256 kb on - strand, within yjfC at 805.256 kb on - strand, within yjfC at 805.259 kb on + strand, within yjfC at 805.259 kb on + strand, within yjfC at 805.303 kb on + strand, within yjfC at 805.304 kb on - strand, within yjfC at 805.304 kb on - strand, within yjfC at 805.304 kb on - strand, within yjfC at 805.304 kb on - strand, within yjfC at 805.313 kb on + strand, within yjfC at 805.369 kb on + strand, within yjfC at 805.369 kb on + strand, within yjfC at 805.369 kb on + strand, within yjfC at 805.379 kb on + strand, within yjfC at 805.414 kb on + strand, within yjfC at 805.415 kb on - strand, within yjfC at 805.492 kb on + strand, within yjfC at 805.492 kb on + strand, within yjfC at 805.492 kb on + strand, within yjfC at 805.493 kb on - strand, within yjfC at 805.493 kb on - strand, within yjfC at 805.519 kb on + strand, within yjfC at 805.520 kb on - strand, within yjfC at 805.574 kb on - strand, within yjfC at 805.621 kb on + strand, within yjfC at 805.622 kb on - strand, within yjfC at 805.748 kb on + strand, within yjfC at 805.749 kb on - strand, within yjfC at 805.797 kb on - strand at 805.949 kb on - strand, within yjfM at 805.966 kb on - strand, within yjfM at 805.966 kb on - strand, within yjfM at 805.966 kb on - strand, within yjfM at 806.001 kb on + strand, within yjfM at 806.061 kb on + strand, within yjfM at 806.061 kb on + strand, within yjfM at 806.087 kb on - strand, within yjfM at 806.151 kb on + strand, within yjfM at 806.152 kb on - strand, within yjfM at 806.170 kb on + strand, within yjfM at 806.171 kb on - strand, within yjfM at 806.171 kb on - strand, within yjfM at 806.171 kb on - strand, within yjfM at 806.171 kb on - strand, within yjfM at 806.194 kb on + strand, within yjfM at 806.195 kb on - strand, within yjfM at 806.263 kb on + strand, within yjfM at 806.264 kb on - strand, within yjfM at 806.278 kb on + strand, within yjfM at 806.390 kb on + strand, within yjfM at 806.391 kb on - strand, within yjfM at 806.603 kb on - strand, within yjfL at 806.631 kb on + strand, within yjfL at 806.631 kb on + strand, within yjfL at 806.632 kb on - strand, within yjfL at 806.632 kb on - strand, within yjfL at 806.694 kb on + strand, within yjfL at 806.912 kb on - strand at 807.019 kb on - strand, within NOLOHH_04460 at 807.038 kb on - strand, within NOLOHH_04460 at 807.053 kb on + strand, within NOLOHH_04460 at 807.145 kb on + strand, within NOLOHH_04465 at 807.145 kb on + strand, within NOLOHH_04465 at 807.146 kb on - strand, within NOLOHH_04465 at 807.146 kb on - strand, within NOLOHH_04465 at 807.213 kb on + strand, within NOLOHH_04465 at 807.269 kb on + strand, within NOLOHH_04465 at 807.270 kb on - strand, within NOLOHH_04465 at 807.280 kb on + strand, within NOLOHH_04465 at 807.280 kb on + strand, within NOLOHH_04465 at 807.292 kb on + strand, within NOLOHH_04465 at 807.327 kb on - strand, within NOLOHH_04465 at 807.327 kb on - strand, within NOLOHH_04465 at 807.376 kb on + strand, within NOLOHH_04465 at 807.376 kb on + strand, within NOLOHH_04465 at 807.377 kb on - strand, within NOLOHH_04465 at 807.377 kb on - strand, within NOLOHH_04465 at 807.377 kb on - strand, within NOLOHH_04465 at 807.380 kb on - strand, within NOLOHH_04465
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 804,955 + yjfC NOLOHH_04445 0.21 +0.3 804,956 - yjfC NOLOHH_04445 0.22 -0.6 804,966 - yjfC NOLOHH_04445 0.22 +0.1 804,974 - yjfC NOLOHH_04445 0.23 -2.1 804,974 - yjfC NOLOHH_04445 0.23 +1.1 805,076 + yjfC NOLOHH_04445 0.32 -3.8 805,077 - yjfC NOLOHH_04445 0.32 +0.2 805,080 - yjfC NOLOHH_04445 0.32 -2.7 805,088 + yjfC NOLOHH_04445 0.33 +1.4 805,181 + yjfC NOLOHH_04445 0.41 -0.3 805,222 - yjfC NOLOHH_04445 0.44 -0.1 805,255 + yjfC NOLOHH_04445 0.47 +0.5 805,255 + yjfC NOLOHH_04445 0.47 +0.5 805,256 - yjfC NOLOHH_04445 0.47 +0.8 805,256 - yjfC NOLOHH_04445 0.47 +0.5 805,256 - yjfC NOLOHH_04445 0.47 -0.1 805,259 + yjfC NOLOHH_04445 0.48 -1.1 805,259 + yjfC NOLOHH_04445 0.48 -0.3 805,303 + yjfC NOLOHH_04445 0.51 +1.2 805,304 - yjfC NOLOHH_04445 0.51 +1.2 805,304 - yjfC NOLOHH_04445 0.51 +0.3 805,304 - yjfC NOLOHH_04445 0.51 +0.8 805,304 - yjfC NOLOHH_04445 0.51 +0.0 805,313 + yjfC NOLOHH_04445 0.52 -1.2 805,369 + yjfC NOLOHH_04445 0.57 +0.8 805,369 + yjfC NOLOHH_04445 0.57 -0.4 805,369 + yjfC NOLOHH_04445 0.57 +0.6 805,379 + yjfC NOLOHH_04445 0.58 +0.0 805,414 + yjfC NOLOHH_04445 0.61 +0.6 805,415 - yjfC NOLOHH_04445 0.61 -3.5 805,492 + yjfC NOLOHH_04445 0.68 -1.5 805,492 + yjfC NOLOHH_04445 0.68 +0.9 805,492 + yjfC NOLOHH_04445 0.68 +1.0 805,493 - yjfC NOLOHH_04445 0.68 -0.3 805,493 - yjfC NOLOHH_04445 0.68 +0.1 805,519 + yjfC NOLOHH_04445 0.70 +0.7 805,520 - yjfC NOLOHH_04445 0.70 +0.0 805,574 - yjfC NOLOHH_04445 0.75 -0.7 805,621 + yjfC NOLOHH_04445 0.79 -0.2 805,622 - yjfC NOLOHH_04445 0.79 +0.1 805,748 + yjfC NOLOHH_04445 0.90 +0.0 805,749 - yjfC NOLOHH_04445 0.90 -1.5 805,797 - -1.9 805,949 - yjfM NOLOHH_04450 0.12 +0.1 805,966 - yjfM NOLOHH_04450 0.15 +1.0 805,966 - yjfM NOLOHH_04450 0.15 +0.8 805,966 - yjfM NOLOHH_04450 0.15 -0.4 806,001 + yjfM NOLOHH_04450 0.20 -2.4 806,061 + yjfM NOLOHH_04450 0.30 +0.1 806,061 + yjfM NOLOHH_04450 0.30 -0.0 806,087 - yjfM NOLOHH_04450 0.34 +1.1 806,151 + yjfM NOLOHH_04450 0.44 -4.4 806,152 - yjfM NOLOHH_04450 0.44 +0.1 806,170 + yjfM NOLOHH_04450 0.47 +0.4 806,171 - yjfM NOLOHH_04450 0.47 -1.2 806,171 - yjfM NOLOHH_04450 0.47 +0.8 806,171 - yjfM NOLOHH_04450 0.47 +1.3 806,171 - yjfM NOLOHH_04450 0.47 +0.4 806,194 + yjfM NOLOHH_04450 0.51 +0.7 806,195 - yjfM NOLOHH_04450 0.51 -0.5 806,263 + yjfM NOLOHH_04450 0.61 +0.6 806,264 - yjfM NOLOHH_04450 0.62 -2.6 806,278 + yjfM NOLOHH_04450 0.64 +0.8 806,390 + yjfM NOLOHH_04450 0.81 -0.1 806,391 - yjfM NOLOHH_04450 0.81 -0.6 806,603 - yjfL NOLOHH_04455 0.21 +0.4 806,631 + yjfL NOLOHH_04455 0.28 -1.2 806,631 + yjfL NOLOHH_04455 0.28 +0.4 806,632 - yjfL NOLOHH_04455 0.28 +1.0 806,632 - yjfL NOLOHH_04455 0.28 +0.6 806,694 + yjfL NOLOHH_04455 0.44 -0.7 806,912 - -1.2 807,019 - NOLOHH_04460 0.55 +1.3 807,038 - NOLOHH_04460 0.67 +1.4 807,053 + NOLOHH_04460 0.77 -1.8 807,145 + NOLOHH_04465 0.15 -1.4 807,145 + NOLOHH_04465 0.15 +0.9 807,146 - NOLOHH_04465 0.15 -0.2 807,146 - NOLOHH_04465 0.15 -1.1 807,213 + NOLOHH_04465 0.28 +1.6 807,269 + NOLOHH_04465 0.38 +0.0 807,270 - NOLOHH_04465 0.39 -0.0 807,280 + NOLOHH_04465 0.41 +0.6 807,280 + NOLOHH_04465 0.41 -0.4 807,292 + NOLOHH_04465 0.43 +0.4 807,327 - NOLOHH_04465 0.49 -1.2 807,327 - NOLOHH_04465 0.49 +0.9 807,376 + NOLOHH_04465 0.59 +0.9 807,376 + NOLOHH_04465 0.59 -1.3 807,377 - NOLOHH_04465 0.59 +0.2 807,377 - NOLOHH_04465 0.59 +0.8 807,377 - NOLOHH_04465 0.59 -1.7 807,380 - NOLOHH_04465 0.59 -0.2
Or see this region's nucleotide sequence