Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjgM and rraB are separated by 45 nucleotides rraB and argF are separated by 161 nucleotides argF and NOLOHH_04095 are separated by 100 nucleotides NOLOHH_04095 and NOLOHH_04100 overlap by 14 nucleotides
NOLOHH_04080: yjgM - Uncharacterized N-acetyltransferase YjgM, at 738,771 to 739,274
yjgM
NOLOHH_04085: rraB - ribonuclease E inhibitor RraB, at 739,320 to 739,736
rraB
NOLOHH_04090: argF - ornithine carbamoyltransferase, at 739,898 to 740,902
argF
NOLOHH_04095: NOLOHH_04095 - DNA-binding protein, at 741,003 to 741,233
_04095
NOLOHH_04100: NOLOHH_04100 - DNA-binding protein, at 741,220 to 742,563
_04100
Position (kb) 739
740
741 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 738.924 kb on + strand, within yjgM at 738.925 kb on - strand, within yjgM at 738.925 kb on - strand, within yjgM at 738.933 kb on + strand, within yjgM at 738.933 kb on + strand, within yjgM at 738.933 kb on + strand, within yjgM at 738.933 kb on + strand, within yjgM at 738.933 kb on + strand, within yjgM at 738.933 kb on + strand, within yjgM at 738.933 kb on + strand, within yjgM at 738.933 kb on + strand, within yjgM at 738.934 kb on - strand, within yjgM at 738.934 kb on - strand, within yjgM at 738.936 kb on - strand, within yjgM at 738.970 kb on - strand, within yjgM at 738.970 kb on - strand, within yjgM at 739.050 kb on + strand, within yjgM at 739.050 kb on + strand, within yjgM at 739.050 kb on + strand, within yjgM at 739.143 kb on + strand, within yjgM at 739.208 kb on + strand, within yjgM at 739.209 kb on - strand, within yjgM at 739.240 kb on + strand at 739.240 kb on + strand at 739.240 kb on + strand at 739.241 kb on - strand at 739.241 kb on - strand at 739.241 kb on - strand at 739.310 kb on - strand at 739.310 kb on - strand at 739.318 kb on - strand at 739.321 kb on + strand at 739.396 kb on + strand, within rraB at 739.396 kb on + strand, within rraB at 739.397 kb on - strand, within rraB at 739.415 kb on - strand, within rraB at 739.643 kb on - strand, within rraB at 739.643 kb on - strand, within rraB at 739.750 kb on + strand at 739.750 kb on + strand at 739.751 kb on - strand at 739.765 kb on - strand at 739.770 kb on + strand at 739.771 kb on - strand at 739.771 kb on - strand at 739.817 kb on + strand at 739.897 kb on + strand at 739.897 kb on + strand at 739.897 kb on + strand at 739.897 kb on + strand at 739.897 kb on + strand at 739.898 kb on - strand at 739.898 kb on - strand at 739.898 kb on - strand at 739.898 kb on - strand at 740.033 kb on - strand, within argF at 740.033 kb on - strand, within argF at 740.099 kb on + strand, within argF at 740.119 kb on + strand, within argF at 740.123 kb on + strand, within argF at 740.123 kb on + strand, within argF at 740.123 kb on + strand, within argF at 740.123 kb on + strand, within argF at 740.124 kb on - strand, within argF at 740.124 kb on - strand, within argF at 740.124 kb on - strand, within argF at 740.155 kb on + strand, within argF at 740.155 kb on + strand, within argF at 740.156 kb on - strand, within argF at 740.156 kb on - strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.199 kb on - strand, within argF at 740.199 kb on - strand, within argF at 740.199 kb on - strand, within argF at 740.199 kb on - strand, within argF at 740.199 kb on - strand, within argF at 740.256 kb on - strand, within argF at 740.378 kb on + strand, within argF at 740.379 kb on - strand, within argF at 740.395 kb on + strand, within argF at 740.395 kb on + strand, within argF at 740.395 kb on + strand, within argF at 740.395 kb on + strand, within argF at 740.396 kb on - strand, within argF at 740.533 kb on + strand, within argF at 740.536 kb on + strand, within argF at 740.553 kb on + strand, within argF at 740.582 kb on - strand, within argF at 740.582 kb on - strand, within argF at 740.585 kb on + strand, within argF at 740.585 kb on + strand, within argF at 740.586 kb on - strand, within argF at 740.587 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.596 kb on - strand, within argF at 740.596 kb on - strand, within argF at 740.596 kb on - strand, within argF at 740.596 kb on - strand, within argF at 740.596 kb on - strand, within argF at 740.646 kb on + strand, within argF at 740.781 kb on + strand, within argF at 740.781 kb on + strand, within argF at 740.782 kb on - strand, within argF at 740.863 kb on + strand at 740.897 kb on - strand at 741.007 kb on - strand at 741.151 kb on - strand, within NOLOHH_04095 at 741.163 kb on + strand, within NOLOHH_04095 at 741.205 kb on + strand, within NOLOHH_04095 at 741.323 kb on - strand at 741.349 kb on + strand at 741.539 kb on + strand, within NOLOHH_04100
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 738,924 + yjgM NOLOHH_04080 0.30 -0.7 738,925 - yjgM NOLOHH_04080 0.31 +0.1 738,925 - yjgM NOLOHH_04080 0.31 +0.9 738,933 + yjgM NOLOHH_04080 0.32 -0.1 738,933 + yjgM NOLOHH_04080 0.32 +0.1 738,933 + yjgM NOLOHH_04080 0.32 -0.0 738,933 + yjgM NOLOHH_04080 0.32 +0.1 738,933 + yjgM NOLOHH_04080 0.32 -2.1 738,933 + yjgM NOLOHH_04080 0.32 +1.1 738,933 + yjgM NOLOHH_04080 0.32 +0.0 738,933 + yjgM NOLOHH_04080 0.32 +0.3 738,934 - yjgM NOLOHH_04080 0.32 -0.8 738,934 - yjgM NOLOHH_04080 0.32 -0.2 738,936 - yjgM NOLOHH_04080 0.33 +0.8 738,970 - yjgM NOLOHH_04080 0.39 +1.6 738,970 - yjgM NOLOHH_04080 0.39 +0.2 739,050 + yjgM NOLOHH_04080 0.55 +0.5 739,050 + yjgM NOLOHH_04080 0.55 -0.1 739,050 + yjgM NOLOHH_04080 0.55 -0.9 739,143 + yjgM NOLOHH_04080 0.74 +0.1 739,208 + yjgM NOLOHH_04080 0.87 -1.0 739,209 - yjgM NOLOHH_04080 0.87 +0.5 739,240 + +0.5 739,240 + -0.8 739,240 + -0.0 739,241 - +0.8 739,241 - +0.2 739,241 - -0.2 739,310 - +1.1 739,310 - +0.2 739,318 - +0.8 739,321 + -0.1 739,396 + rraB NOLOHH_04085 0.18 -1.8 739,396 + rraB NOLOHH_04085 0.18 -0.4 739,397 - rraB NOLOHH_04085 0.18 +1.1 739,415 - rraB NOLOHH_04085 0.23 +0.3 739,643 - rraB NOLOHH_04085 0.77 -0.6 739,643 - rraB NOLOHH_04085 0.77 -1.5 739,750 + +0.0 739,750 + -1.3 739,751 - -3.7 739,765 - -0.7 739,770 + -0.5 739,771 - -0.3 739,771 - -1.8 739,817 + +0.8 739,897 + -4.1 739,897 + -1.9 739,897 + -5.7 739,897 + -0.8 739,897 + -4.7 739,898 - -3.3 739,898 - -2.7 739,898 - -3.7 739,898 - -4.0 740,033 - argF NOLOHH_04090 0.13 -1.8 740,033 - argF NOLOHH_04090 0.13 -1.7 740,099 + argF NOLOHH_04090 0.20 -1.8 740,119 + argF NOLOHH_04090 0.22 -0.3 740,123 + argF NOLOHH_04090 0.22 -3.1 740,123 + argF NOLOHH_04090 0.22 -5.4 740,123 + argF NOLOHH_04090 0.22 -5.5 740,123 + argF NOLOHH_04090 0.22 -5.5 740,124 - argF NOLOHH_04090 0.22 -5.1 740,124 - argF NOLOHH_04090 0.22 -4.2 740,124 - argF NOLOHH_04090 0.22 -3.9 740,155 + argF NOLOHH_04090 0.26 -5.4 740,155 + argF NOLOHH_04090 0.26 -1.8 740,156 - argF NOLOHH_04090 0.26 -0.6 740,156 - argF NOLOHH_04090 0.26 -4.4 740,198 + argF NOLOHH_04090 0.30 -4.4 740,198 + argF NOLOHH_04090 0.30 -4.8 740,198 + argF NOLOHH_04090 0.30 -4.9 740,198 + argF NOLOHH_04090 0.30 -3.4 740,198 + argF NOLOHH_04090 0.30 -1.9 740,198 + argF NOLOHH_04090 0.30 -3.3 740,198 + argF NOLOHH_04090 0.30 -3.0 740,199 - argF NOLOHH_04090 0.30 -5.2 740,199 - argF NOLOHH_04090 0.30 -4.7 740,199 - argF NOLOHH_04090 0.30 -4.6 740,199 - argF NOLOHH_04090 0.30 -2.2 740,199 - argF NOLOHH_04090 0.30 -4.7 740,256 - argF NOLOHH_04090 0.36 -4.4 740,378 + argF NOLOHH_04090 0.48 -2.4 740,379 - argF NOLOHH_04090 0.48 -3.0 740,395 + argF NOLOHH_04090 0.49 -4.6 740,395 + argF NOLOHH_04090 0.49 -4.1 740,395 + argF NOLOHH_04090 0.49 -2.5 740,395 + argF NOLOHH_04090 0.49 -2.5 740,396 - argF NOLOHH_04090 0.50 -3.2 740,533 + argF NOLOHH_04090 0.63 -0.3 740,536 + argF NOLOHH_04090 0.63 -2.8 740,553 + argF NOLOHH_04090 0.65 -3.4 740,582 - argF NOLOHH_04090 0.68 -4.1 740,582 - argF NOLOHH_04090 0.68 -3.7 740,585 + argF NOLOHH_04090 0.68 -4.8 740,585 + argF NOLOHH_04090 0.68 -5.7 740,586 - argF NOLOHH_04090 0.68 +0.4 740,587 + argF NOLOHH_04090 0.69 -4.4 740,595 + argF NOLOHH_04090 0.69 -4.1 740,595 + argF NOLOHH_04090 0.69 -2.6 740,595 + argF NOLOHH_04090 0.69 -4.5 740,595 + argF NOLOHH_04090 0.69 -5.9 740,595 + argF NOLOHH_04090 0.69 -1.9 740,596 - argF NOLOHH_04090 0.69 -2.7 740,596 - argF NOLOHH_04090 0.69 -4.0 740,596 - argF NOLOHH_04090 0.69 -3.5 740,596 - argF NOLOHH_04090 0.69 -1.8 740,596 - argF NOLOHH_04090 0.69 -4.2 740,646 + argF NOLOHH_04090 0.74 -0.8 740,781 + argF NOLOHH_04090 0.88 -3.5 740,781 + argF NOLOHH_04090 0.88 -4.4 740,782 - argF NOLOHH_04090 0.88 -1.0 740,863 + -0.8 740,897 - -0.9 741,007 - +0.3 741,151 - NOLOHH_04095 0.64 -0.9 741,163 + NOLOHH_04095 0.69 -3.0 741,205 + NOLOHH_04095 0.87 +0.9 741,323 - +1.7 741,349 + -2.6 741,539 + NOLOHH_04100 0.24 -2.6
Or see this region's nucleotide sequence