Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prfC and yjjG are separated by 63 nucleotides yjjG and rimI are separated by 14 nucleotides rimI and holD overlap by 32 nucleotides holD and rsmC are separated by 102 nucleotides
NOLOHH_03600: prfC - peptide chain release factor 3, at 640,133 to 641,749
prfC
NOLOHH_03605: yjjG - pyrimidine 5'-nucleotidase, at 641,813 to 642,490
yjjG
NOLOHH_03610: rimI - ribosomal protein S18-alanine N-acetyltransferase, at 642,505 to 642,951
rimI
NOLOHH_03615: holD - DNA polymerase III subunit psi, at 642,920 to 643,333
holD
NOLOHH_03620: rsmC - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 643,436 to 644,467
rsmC
Position (kb) 642
643 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 641.509 kb on + strand, within prfC at 641.509 kb on + strand, within prfC at 641.509 kb on + strand, within prfC at 641.509 kb on + strand, within prfC at 641.510 kb on - strand, within prfC at 641.510 kb on - strand, within prfC at 641.510 kb on - strand, within prfC at 641.512 kb on + strand, within prfC at 641.512 kb on + strand, within prfC at 641.512 kb on + strand, within prfC at 641.513 kb on - strand, within prfC at 641.557 kb on + strand, within prfC at 641.585 kb on + strand, within prfC at 641.585 kb on + strand, within prfC at 641.591 kb on - strand at 641.641 kb on + strand at 641.641 kb on + strand at 641.641 kb on + strand at 641.669 kb on - strand at 641.707 kb on - strand at 641.707 kb on - strand at 641.722 kb on + strand at 641.722 kb on + strand at 641.723 kb on - strand at 641.723 kb on - strand at 641.741 kb on - strand at 642.084 kb on + strand, within yjjG at 642.178 kb on + strand, within yjjG at 642.229 kb on + strand, within yjjG at 642.233 kb on - strand, within yjjG at 642.233 kb on - strand, within yjjG at 642.233 kb on - strand, within yjjG at 642.445 kb on + strand at 642.445 kb on + strand at 642.506 kb on + strand at 642.506 kb on + strand at 642.507 kb on - strand at 642.507 kb on - strand at 642.507 kb on - strand at 642.507 kb on - strand at 642.510 kb on + strand at 642.510 kb on + strand at 642.510 kb on + strand at 642.510 kb on + strand at 642.511 kb on - strand at 642.566 kb on + strand, within rimI at 642.566 kb on + strand, within rimI at 642.567 kb on - strand, within rimI at 642.567 kb on - strand, within rimI at 642.599 kb on - strand, within rimI at 642.652 kb on + strand, within rimI at 642.653 kb on - strand, within rimI at 642.653 kb on - strand, within rimI at 642.728 kb on + strand, within rimI at 642.747 kb on + strand, within rimI at 642.747 kb on + strand, within rimI at 642.748 kb on - strand, within rimI at 642.759 kb on + strand, within rimI at 642.759 kb on + strand, within rimI at 642.759 kb on + strand, within rimI at 642.759 kb on + strand, within rimI at 642.759 kb on + strand, within rimI at 642.759 kb on + strand, within rimI at 642.759 kb on + strand, within rimI at 642.759 kb on + strand, within rimI at 642.759 kb on + strand, within rimI at 642.759 kb on + strand, within rimI at 642.760 kb on - strand, within rimI at 642.760 kb on - strand, within rimI at 642.760 kb on - strand, within rimI at 642.760 kb on - strand, within rimI at 642.760 kb on - strand, within rimI at 642.760 kb on - strand, within rimI at 642.817 kb on + strand, within rimI at 642.818 kb on - strand, within rimI at 642.833 kb on + strand, within rimI at 642.906 kb on - strand, within rimI at 642.916 kb on + strand at 642.916 kb on + strand at 642.951 kb on + strand at 642.952 kb on - strand at 642.952 kb on - strand at 642.952 kb on - strand at 643.307 kb on + strand at 643.308 kb on - strand at 643.308 kb on - strand at 643.334 kb on - strand at 643.366 kb on - strand at 643.366 kb on - strand at 643.368 kb on - strand at 643.395 kb on + strand at 643.395 kb on + strand at 643.395 kb on + strand at 643.395 kb on + strand at 643.395 kb on + strand at 643.395 kb on + strand at 643.395 kb on + strand at 643.396 kb on - strand at 643.396 kb on - strand at 643.396 kb on - strand at 643.396 kb on - strand at 643.396 kb on - strand at 643.396 kb on - strand at 643.396 kb on - strand at 643.401 kb on + strand at 643.401 kb on + strand at 643.402 kb on - strand at 643.402 kb on - strand at 643.416 kb on + strand at 643.417 kb on - strand at 643.501 kb on + strand at 643.521 kb on + strand at 643.521 kb on + strand at 643.522 kb on - strand at 643.545 kb on + strand, within rsmC at 643.546 kb on - strand, within rsmC at 643.546 kb on - strand, within rsmC at 643.571 kb on - strand, within rsmC at 643.596 kb on + strand, within rsmC at 643.600 kb on - strand, within rsmC at 643.669 kb on + strand, within rsmC at 643.679 kb on + strand, within rsmC at 643.680 kb on - strand, within rsmC at 643.756 kb on + strand, within rsmC at 643.756 kb on + strand, within rsmC at 643.757 kb on - strand, within rsmC at 643.757 kb on - strand, within rsmC at 643.817 kb on + strand, within rsmC at 643.818 kb on - strand, within rsmC at 643.832 kb on - strand, within rsmC at 643.863 kb on - strand, within rsmC at 643.863 kb on - strand, within rsmC at 643.863 kb on - strand, within rsmC at 643.920 kb on - strand, within rsmC
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 641,509 + prfC NOLOHH_03600 0.85 -1.4 641,509 + prfC NOLOHH_03600 0.85 +0.2 641,509 + prfC NOLOHH_03600 0.85 -4.1 641,509 + prfC NOLOHH_03600 0.85 -1.4 641,510 - prfC NOLOHH_03600 0.85 -1.4 641,510 - prfC NOLOHH_03600 0.85 +0.4 641,510 - prfC NOLOHH_03600 0.85 -0.3 641,512 + prfC NOLOHH_03600 0.85 +0.5 641,512 + prfC NOLOHH_03600 0.85 -1.7 641,512 + prfC NOLOHH_03600 0.85 +0.2 641,513 - prfC NOLOHH_03600 0.85 -2.8 641,557 + prfC NOLOHH_03600 0.88 -1.4 641,585 + prfC NOLOHH_03600 0.90 -0.8 641,585 + prfC NOLOHH_03600 0.90 -0.3 641,591 - +1.0 641,641 + -1.7 641,641 + +0.2 641,641 + +0.1 641,669 - -1.3 641,707 - -2.6 641,707 - -0.9 641,722 + -1.6 641,722 + -1.7 641,723 - -3.2 641,723 - -2.7 641,741 - +2.5 642,084 + yjjG NOLOHH_03605 0.40 +1.7 642,178 + yjjG NOLOHH_03605 0.54 -1.8 642,229 + yjjG NOLOHH_03605 0.61 +0.4 642,233 - yjjG NOLOHH_03605 0.62 -0.6 642,233 - yjjG NOLOHH_03605 0.62 +0.4 642,233 - yjjG NOLOHH_03605 0.62 +1.5 642,445 + +3.9 642,445 + +0.8 642,506 + +0.2 642,506 + -0.2 642,507 - -0.1 642,507 - +0.5 642,507 - -0.8 642,507 - +0.6 642,510 + +0.7 642,510 + +0.4 642,510 + -0.3 642,510 + +0.1 642,511 - +0.8 642,566 + rimI NOLOHH_03610 0.14 +0.7 642,566 + rimI NOLOHH_03610 0.14 +1.3 642,567 - rimI NOLOHH_03610 0.14 +0.7 642,567 - rimI NOLOHH_03610 0.14 +1.8 642,599 - rimI NOLOHH_03610 0.21 -0.4 642,652 + rimI NOLOHH_03610 0.33 +0.5 642,653 - rimI NOLOHH_03610 0.33 +0.7 642,653 - rimI NOLOHH_03610 0.33 +0.3 642,728 + rimI NOLOHH_03610 0.50 +0.5 642,747 + rimI NOLOHH_03610 0.54 +0.5 642,747 + rimI NOLOHH_03610 0.54 +0.9 642,748 - rimI NOLOHH_03610 0.54 +1.3 642,759 + rimI NOLOHH_03610 0.57 +0.7 642,759 + rimI NOLOHH_03610 0.57 +0.7 642,759 + rimI NOLOHH_03610 0.57 +1.2 642,759 + rimI NOLOHH_03610 0.57 +0.9 642,759 + rimI NOLOHH_03610 0.57 +1.3 642,759 + rimI NOLOHH_03610 0.57 +1.7 642,759 + rimI NOLOHH_03610 0.57 +0.6 642,759 + rimI NOLOHH_03610 0.57 +0.2 642,759 + rimI NOLOHH_03610 0.57 +1.0 642,759 + rimI NOLOHH_03610 0.57 +1.4 642,760 - rimI NOLOHH_03610 0.57 +1.2 642,760 - rimI NOLOHH_03610 0.57 +0.9 642,760 - rimI NOLOHH_03610 0.57 +1.3 642,760 - rimI NOLOHH_03610 0.57 +2.2 642,760 - rimI NOLOHH_03610 0.57 +1.9 642,760 - rimI NOLOHH_03610 0.57 +0.8 642,817 + rimI NOLOHH_03610 0.70 +0.9 642,818 - rimI NOLOHH_03610 0.70 +1.1 642,833 + rimI NOLOHH_03610 0.73 +1.0 642,906 - rimI NOLOHH_03610 0.90 +0.7 642,916 + +1.4 642,916 + +1.1 642,951 + +1.1 642,952 - +2.0 642,952 - +0.3 642,952 - -0.0 643,307 + +1.1 643,308 - +0.3 643,308 - +0.7 643,334 - -0.1 643,366 - +0.9 643,366 - -1.0 643,368 - +1.6 643,395 + -0.9 643,395 + -0.0 643,395 + -2.0 643,395 + +0.9 643,395 + +0.2 643,395 + +1.0 643,395 + +1.8 643,396 - -1.1 643,396 - +0.0 643,396 - +0.8 643,396 - -0.3 643,396 - +0.1 643,396 - -0.4 643,396 - +0.8 643,401 + +1.0 643,401 + -1.0 643,402 - -0.3 643,402 - -1.7 643,416 + +0.7 643,417 - +0.4 643,501 + -0.4 643,521 + +0.1 643,521 + -0.1 643,522 - -1.3 643,545 + rsmC NOLOHH_03620 0.11 -1.0 643,546 - rsmC NOLOHH_03620 0.11 +0.0 643,546 - rsmC NOLOHH_03620 0.11 -2.2 643,571 - rsmC NOLOHH_03620 0.13 -2.8 643,596 + rsmC NOLOHH_03620 0.16 +0.5 643,600 - rsmC NOLOHH_03620 0.16 +0.1 643,669 + rsmC NOLOHH_03620 0.23 +0.8 643,679 + rsmC NOLOHH_03620 0.24 -1.1 643,680 - rsmC NOLOHH_03620 0.24 +0.3 643,756 + rsmC NOLOHH_03620 0.31 +1.2 643,756 + rsmC NOLOHH_03620 0.31 +0.1 643,757 - rsmC NOLOHH_03620 0.31 +0.4 643,757 - rsmC NOLOHH_03620 0.31 -0.4 643,817 + rsmC NOLOHH_03620 0.37 +1.1 643,818 - rsmC NOLOHH_03620 0.37 +0.5 643,832 - rsmC NOLOHH_03620 0.38 +0.2 643,863 - rsmC NOLOHH_03620 0.41 -0.6 643,863 - rsmC NOLOHH_03620 0.41 -2.5 643,863 - rsmC NOLOHH_03620 0.41 +0.2 643,920 - rsmC NOLOHH_03620 0.47 -0.6
Or see this region's nucleotide sequence