Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt robA and NOLOHH_03485 overlap by 4 nucleotides NOLOHH_03485 and yjjX are separated by 51 nucleotides yjjX and trpR are separated by 41 nucleotides trpR and sltY are separated by 119 nucleotides
NOLOHH_03480: robA - MDR efflux pump AcrAB transcriptional activator RobA, at 615,977 to 616,846
robA
NOLOHH_03485: NOLOHH_03485 - putative phosphoglycerate mutase GpmB, at 616,843 to 617,490
_03485
NOLOHH_03490: yjjX - inosine/xanthosine triphosphatase, at 617,542 to 618,054
yjjX
NOLOHH_03495: trpR - trp operon repressor, at 618,096 to 618,392
trpR
NOLOHH_03500: sltY - murein transglycosylase, at 618,512 to 620,449
sltY
Position (kb) 617
618
619 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 616.563 kb on + strand, within robA at 616.563 kb on + strand, within robA at 616.564 kb on - strand, within robA at 616.564 kb on - strand, within robA at 616.568 kb on + strand, within robA at 616.568 kb on + strand, within robA at 616.568 kb on + strand, within robA at 616.568 kb on + strand, within robA at 616.568 kb on + strand, within robA at 616.569 kb on - strand, within robA at 616.569 kb on - strand, within robA at 616.569 kb on - strand, within robA at 616.604 kb on + strand, within robA at 616.605 kb on - strand, within robA at 616.605 kb on - strand, within robA at 616.605 kb on - strand, within robA at 616.605 kb on - strand, within robA at 616.608 kb on + strand, within robA at 616.608 kb on + strand, within robA at 616.609 kb on - strand, within robA at 616.646 kb on + strand, within robA at 616.657 kb on + strand, within robA at 616.661 kb on + strand, within robA at 616.662 kb on - strand, within robA at 616.807 kb on + strand at 616.808 kb on - strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.862 kb on - strand at 616.862 kb on - strand at 616.862 kb on - strand at 616.940 kb on + strand, within NOLOHH_03485 at 616.956 kb on + strand, within NOLOHH_03485 at 616.957 kb on - strand, within NOLOHH_03485 at 616.965 kb on + strand, within NOLOHH_03485 at 616.966 kb on - strand, within NOLOHH_03485 at 616.975 kb on + strand, within NOLOHH_03485 at 616.975 kb on + strand, within NOLOHH_03485 at 616.976 kb on - strand, within NOLOHH_03485 at 616.976 kb on - strand, within NOLOHH_03485 at 617.074 kb on + strand, within NOLOHH_03485 at 617.145 kb on + strand, within NOLOHH_03485 at 617.146 kb on - strand, within NOLOHH_03485 at 617.215 kb on - strand, within NOLOHH_03485 at 617.215 kb on - strand, within NOLOHH_03485 at 617.242 kb on + strand, within NOLOHH_03485 at 617.242 kb on + strand, within NOLOHH_03485 at 617.243 kb on - strand, within NOLOHH_03485 at 617.340 kb on + strand, within NOLOHH_03485 at 617.340 kb on + strand, within NOLOHH_03485 at 617.434 kb on - strand at 617.434 kb on - strand at 617.473 kb on + strand at 617.473 kb on + strand at 617.473 kb on + strand at 617.477 kb on + strand at 617.477 kb on + strand at 617.477 kb on + strand at 617.477 kb on + strand at 617.477 kb on + strand at 617.478 kb on - strand at 617.478 kb on - strand at 617.478 kb on - strand at 617.478 kb on - strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.480 kb on - strand at 617.480 kb on - strand at 617.480 kb on - strand at 617.480 kb on - strand at 617.486 kb on - strand at 617.486 kb on - strand at 617.503 kb on + strand at 617.503 kb on + strand at 617.504 kb on - strand at 617.505 kb on + strand at 617.513 kb on + strand at 617.663 kb on + strand, within yjjX at 617.735 kb on + strand, within yjjX at 617.735 kb on + strand, within yjjX at 617.735 kb on + strand, within yjjX at 618.040 kb on - strand at 618.052 kb on + strand at 618.053 kb on - strand at 618.082 kb on - strand at 618.164 kb on + strand, within trpR at 618.165 kb on - strand, within trpR at 618.165 kb on - strand, within trpR at 618.165 kb on - strand, within trpR at 618.165 kb on - strand, within trpR at 618.307 kb on - strand, within trpR at 618.364 kb on - strand at 618.403 kb on + strand at 618.404 kb on - strand at 618.422 kb on + strand at 618.423 kb on - strand at 618.423 kb on - strand at 618.423 kb on - strand at 618.425 kb on + strand at 618.426 kb on - strand at 618.426 kb on - strand at 618.426 kb on - strand at 618.426 kb on - strand at 618.426 kb on - strand at 618.486 kb on - strand at 618.495 kb on + strand at 618.495 kb on + strand at 618.496 kb on - strand at 618.501 kb on - strand at 618.576 kb on + strand at 618.588 kb on + strand at 618.589 kb on - strand at 618.609 kb on + strand at 618.610 kb on - strand at 618.634 kb on + strand at 618.634 kb on + strand at 618.635 kb on - strand at 618.713 kb on - strand, within sltY at 618.714 kb on + strand, within sltY at 618.733 kb on + strand, within sltY at 618.762 kb on + strand, within sltY at 618.762 kb on + strand, within sltY at 618.762 kb on + strand, within sltY at 618.762 kb on + strand, within sltY at 618.763 kb on - strand, within sltY at 618.763 kb on - strand, within sltY at 618.771 kb on + strand, within sltY at 618.826 kb on + strand, within sltY at 618.828 kb on + strand, within sltY at 618.829 kb on - strand, within sltY at 618.838 kb on + strand, within sltY at 618.839 kb on - strand, within sltY at 618.869 kb on - strand, within sltY at 618.878 kb on - strand, within sltY at 618.878 kb on - strand, within sltY at 618.878 kb on - strand, within sltY at 618.960 kb on + strand, within sltY at 618.960 kb on + strand, within sltY at 618.960 kb on + strand, within sltY at 618.961 kb on - strand, within sltY at 618.961 kb on - strand, within sltY at 618.961 kb on - strand, within sltY at 618.961 kb on - strand, within sltY at 618.991 kb on - strand, within sltY at 619.012 kb on - strand, within sltY
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 616,563 + robA NOLOHH_03480 0.67 +0.4 616,563 + robA NOLOHH_03480 0.67 -0.5 616,564 - robA NOLOHH_03480 0.67 -2.9 616,564 - robA NOLOHH_03480 0.67 -2.4 616,568 + robA NOLOHH_03480 0.68 -3.3 616,568 + robA NOLOHH_03480 0.68 -0.4 616,568 + robA NOLOHH_03480 0.68 +0.3 616,568 + robA NOLOHH_03480 0.68 +1.0 616,568 + robA NOLOHH_03480 0.68 -0.1 616,569 - robA NOLOHH_03480 0.68 -3.7 616,569 - robA NOLOHH_03480 0.68 +0.6 616,569 - robA NOLOHH_03480 0.68 -2.3 616,604 + robA NOLOHH_03480 0.72 -1.5 616,605 - robA NOLOHH_03480 0.72 +0.7 616,605 - robA NOLOHH_03480 0.72 -1.2 616,605 - robA NOLOHH_03480 0.72 -4.8 616,605 - robA NOLOHH_03480 0.72 -1.9 616,608 + robA NOLOHH_03480 0.73 -0.2 616,608 + robA NOLOHH_03480 0.73 -0.9 616,609 - robA NOLOHH_03480 0.73 -2.8 616,646 + robA NOLOHH_03480 0.77 +0.4 616,657 + robA NOLOHH_03480 0.78 -1.2 616,661 + robA NOLOHH_03480 0.79 -0.5 616,662 - robA NOLOHH_03480 0.79 -0.8 616,807 + -2.9 616,808 - -1.0 616,861 + +0.3 616,861 + -0.0 616,861 + -0.7 616,861 + +0.2 616,861 + +0.2 616,861 + -1.3 616,862 - -0.5 616,862 - +0.7 616,862 - -0.1 616,940 + NOLOHH_03485 0.15 +0.3 616,956 + NOLOHH_03485 0.17 +0.2 616,957 - NOLOHH_03485 0.18 -0.2 616,965 + NOLOHH_03485 0.19 +0.8 616,966 - NOLOHH_03485 0.19 -1.2 616,975 + NOLOHH_03485 0.20 +0.5 616,975 + NOLOHH_03485 0.20 -0.6 616,976 - NOLOHH_03485 0.21 -2.7 616,976 - NOLOHH_03485 0.21 -4.8 617,074 + NOLOHH_03485 0.36 +0.6 617,145 + NOLOHH_03485 0.47 -0.1 617,146 - NOLOHH_03485 0.47 -3.3 617,215 - NOLOHH_03485 0.57 +0.6 617,215 - NOLOHH_03485 0.57 -0.7 617,242 + NOLOHH_03485 0.62 +0.5 617,242 + NOLOHH_03485 0.62 -0.6 617,243 - NOLOHH_03485 0.62 -0.4 617,340 + NOLOHH_03485 0.77 -1.8 617,340 + NOLOHH_03485 0.77 -2.8 617,434 - -1.5 617,434 - -4.0 617,473 + +0.3 617,473 + -0.9 617,473 + -0.6 617,477 + +0.4 617,477 + -3.7 617,477 + +0.2 617,477 + +0.4 617,477 + -0.0 617,478 - +0.6 617,478 - +0.9 617,478 - -0.2 617,478 - -0.1 617,479 + +0.6 617,479 + -1.3 617,479 + -0.1 617,479 + -1.6 617,479 + +0.4 617,479 + -1.5 617,479 + +2.7 617,480 - -0.1 617,480 - +0.6 617,480 - +2.4 617,480 - +0.1 617,486 - +0.3 617,486 - -0.6 617,503 + -0.3 617,503 + +0.5 617,504 - -0.7 617,505 + -0.1 617,513 + +1.5 617,663 + yjjX NOLOHH_03490 0.24 +1.2 617,735 + yjjX NOLOHH_03490 0.38 +0.9 617,735 + yjjX NOLOHH_03490 0.38 +1.6 617,735 + yjjX NOLOHH_03490 0.38 +1.0 618,040 - -0.9 618,052 + -0.9 618,053 - +0.9 618,082 - -0.1 618,164 + trpR NOLOHH_03495 0.23 +0.5 618,165 - trpR NOLOHH_03495 0.23 -0.0 618,165 - trpR NOLOHH_03495 0.23 +1.1 618,165 - trpR NOLOHH_03495 0.23 -1.0 618,165 - trpR NOLOHH_03495 0.23 +1.5 618,307 - trpR NOLOHH_03495 0.71 +0.5 618,364 - -0.5 618,403 + +1.3 618,404 - +1.7 618,422 + +0.7 618,423 - -0.1 618,423 - +0.6 618,423 - +1.7 618,425 + +1.1 618,426 - +1.1 618,426 - +0.8 618,426 - +1.2 618,426 - +1.2 618,426 - +0.7 618,486 - +0.3 618,495 + -0.9 618,495 + -0.6 618,496 - -1.0 618,501 - +0.5 618,576 + +1.2 618,588 + -2.1 618,589 - -0.2 618,609 + +1.3 618,610 - -0.1 618,634 + +1.3 618,634 + +1.2 618,635 - -0.1 618,713 - sltY NOLOHH_03500 0.10 +0.8 618,714 + sltY NOLOHH_03500 0.10 -0.3 618,733 + sltY NOLOHH_03500 0.11 +0.5 618,762 + sltY NOLOHH_03500 0.13 -0.1 618,762 + sltY NOLOHH_03500 0.13 -4.6 618,762 + sltY NOLOHH_03500 0.13 +0.1 618,762 + sltY NOLOHH_03500 0.13 -1.4 618,763 - sltY NOLOHH_03500 0.13 -0.0 618,763 - sltY NOLOHH_03500 0.13 -2.8 618,771 + sltY NOLOHH_03500 0.13 -0.6 618,826 + sltY NOLOHH_03500 0.16 +0.2 618,828 + sltY NOLOHH_03500 0.16 -0.2 618,829 - sltY NOLOHH_03500 0.16 +0.1 618,838 + sltY NOLOHH_03500 0.17 -0.4 618,839 - sltY NOLOHH_03500 0.17 -2.4 618,869 - sltY NOLOHH_03500 0.18 +1.1 618,878 - sltY NOLOHH_03500 0.19 +0.2 618,878 - sltY NOLOHH_03500 0.19 -1.1 618,878 - sltY NOLOHH_03500 0.19 -1.8 618,960 + sltY NOLOHH_03500 0.23 +0.3 618,960 + sltY NOLOHH_03500 0.23 -0.5 618,960 + sltY NOLOHH_03500 0.23 -0.9 618,961 - sltY NOLOHH_03500 0.23 +0.3 618,961 - sltY NOLOHH_03500 0.23 +0.9 618,961 - sltY NOLOHH_03500 0.23 -1.6 618,961 - sltY NOLOHH_03500 0.23 -0.7 618,991 - sltY NOLOHH_03500 0.25 -0.3 619,012 - sltY NOLOHH_03500 0.26 +0.4
Or see this region's nucleotide sequence