Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt creB and creA are separated by 12 nucleotides creA and robA are separated by 210 nucleotides robA and NOLOHH_03485 overlap by 4 nucleotides NOLOHH_03485 and yjjX are separated by 51 nucleotides
NOLOHH_03470: creB - two-component system response regulator CreB, at 614,591 to 615,280
creB
NOLOHH_03475: creA - protein CreA, at 615,293 to 615,766
creA
NOLOHH_03480: robA - MDR efflux pump AcrAB transcriptional activator RobA, at 615,977 to 616,846
robA
NOLOHH_03485: NOLOHH_03485 - putative phosphoglycerate mutase GpmB, at 616,843 to 617,490
_03485
NOLOHH_03490: yjjX - inosine/xanthosine triphosphatase, at 617,542 to 618,054
yjjX
Position (kb) 615
616
617 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 614.979 kb on + strand, within creB at 614.979 kb on + strand, within creB at 614.979 kb on + strand, within creB at 615.047 kb on + strand, within creB at 615.047 kb on + strand, within creB at 615.047 kb on + strand, within creB at 615.047 kb on - strand, within creB at 615.087 kb on - strand, within creB at 615.219 kb on + strand at 615.219 kb on + strand at 615.220 kb on - strand at 615.220 kb on - strand at 615.280 kb on + strand at 615.280 kb on + strand at 615.280 kb on + strand at 615.281 kb on - strand at 615.294 kb on + strand at 615.294 kb on + strand at 615.394 kb on + strand, within creA at 615.402 kb on + strand, within creA at 615.402 kb on + strand, within creA at 615.402 kb on + strand, within creA at 615.427 kb on + strand, within creA at 615.427 kb on + strand, within creA at 615.428 kb on - strand, within creA at 615.442 kb on + strand, within creA at 615.442 kb on + strand, within creA at 615.443 kb on - strand, within creA at 615.443 kb on - strand, within creA at 615.456 kb on - strand, within creA at 615.458 kb on + strand, within creA at 615.458 kb on + strand, within creA at 615.459 kb on - strand, within creA at 615.459 kb on - strand, within creA at 615.484 kb on + strand, within creA at 615.485 kb on - strand, within creA at 615.571 kb on + strand, within creA at 615.571 kb on + strand, within creA at 615.574 kb on + strand, within creA at 615.600 kb on + strand, within creA at 615.601 kb on - strand, within creA at 615.673 kb on + strand, within creA at 615.678 kb on - strand, within creA at 615.678 kb on - strand, within creA at 615.738 kb on - strand at 615.759 kb on + strand at 615.785 kb on + strand at 615.785 kb on + strand at 615.800 kb on + strand at 615.800 kb on + strand at 615.801 kb on - strand at 615.801 kb on - strand at 615.801 kb on - strand at 615.817 kb on + strand at 615.818 kb on - strand at 615.823 kb on - strand at 615.875 kb on + strand at 615.876 kb on - strand at 615.880 kb on + strand at 615.880 kb on + strand at 615.880 kb on + strand at 615.926 kb on - strand at 615.976 kb on + strand at 616.008 kb on + strand at 616.073 kb on + strand, within robA at 616.074 kb on - strand, within robA at 616.089 kb on + strand, within robA at 616.102 kb on + strand, within robA at 616.133 kb on + strand, within robA at 616.134 kb on - strand, within robA at 616.134 kb on - strand, within robA at 616.135 kb on + strand, within robA at 616.135 kb on + strand, within robA at 616.135 kb on + strand, within robA at 616.241 kb on - strand, within robA at 616.284 kb on - strand, within robA at 616.409 kb on + strand, within robA at 616.409 kb on + strand, within robA at 616.409 kb on + strand, within robA at 616.409 kb on + strand, within robA at 616.409 kb on + strand, within robA at 616.563 kb on + strand, within robA at 616.563 kb on + strand, within robA at 616.564 kb on - strand, within robA at 616.564 kb on - strand, within robA at 616.568 kb on + strand, within robA at 616.568 kb on + strand, within robA at 616.568 kb on + strand, within robA at 616.568 kb on + strand, within robA at 616.568 kb on + strand, within robA at 616.569 kb on - strand, within robA at 616.569 kb on - strand, within robA at 616.569 kb on - strand, within robA at 616.604 kb on + strand, within robA at 616.605 kb on - strand, within robA at 616.605 kb on - strand, within robA at 616.605 kb on - strand, within robA at 616.605 kb on - strand, within robA at 616.608 kb on + strand, within robA at 616.608 kb on + strand, within robA at 616.609 kb on - strand, within robA at 616.646 kb on + strand, within robA at 616.657 kb on + strand, within robA at 616.661 kb on + strand, within robA at 616.662 kb on - strand, within robA at 616.807 kb on + strand at 616.808 kb on - strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.861 kb on + strand at 616.862 kb on - strand at 616.862 kb on - strand at 616.862 kb on - strand at 616.940 kb on + strand, within NOLOHH_03485 at 616.956 kb on + strand, within NOLOHH_03485 at 616.957 kb on - strand, within NOLOHH_03485 at 616.965 kb on + strand, within NOLOHH_03485 at 616.966 kb on - strand, within NOLOHH_03485 at 616.975 kb on + strand, within NOLOHH_03485 at 616.975 kb on + strand, within NOLOHH_03485 at 616.976 kb on - strand, within NOLOHH_03485 at 616.976 kb on - strand, within NOLOHH_03485 at 617.074 kb on + strand, within NOLOHH_03485 at 617.145 kb on + strand, within NOLOHH_03485 at 617.146 kb on - strand, within NOLOHH_03485 at 617.215 kb on - strand, within NOLOHH_03485 at 617.215 kb on - strand, within NOLOHH_03485 at 617.242 kb on + strand, within NOLOHH_03485 at 617.242 kb on + strand, within NOLOHH_03485 at 617.243 kb on - strand, within NOLOHH_03485 at 617.340 kb on + strand, within NOLOHH_03485 at 617.340 kb on + strand, within NOLOHH_03485 at 617.434 kb on - strand at 617.434 kb on - strand at 617.473 kb on + strand at 617.473 kb on + strand at 617.473 kb on + strand at 617.477 kb on + strand at 617.477 kb on + strand at 617.477 kb on + strand at 617.477 kb on + strand at 617.477 kb on + strand at 617.478 kb on - strand at 617.478 kb on - strand at 617.478 kb on - strand at 617.478 kb on - strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.479 kb on + strand at 617.480 kb on - strand at 617.480 kb on - strand at 617.480 kb on - strand at 617.480 kb on - strand at 617.486 kb on - strand at 617.486 kb on - strand at 617.503 kb on + strand at 617.503 kb on + strand at 617.504 kb on - strand at 617.505 kb on + strand at 617.513 kb on + strand at 617.663 kb on + strand, within yjjX at 617.735 kb on + strand, within yjjX at 617.735 kb on + strand, within yjjX at 617.735 kb on + strand, within yjjX
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 614,979 + creB NOLOHH_03470 0.56 +0.4 614,979 + creB NOLOHH_03470 0.56 +1.1 614,979 + creB NOLOHH_03470 0.56 +0.6 615,047 + creB NOLOHH_03470 0.66 -0.9 615,047 + creB NOLOHH_03470 0.66 +0.7 615,047 + creB NOLOHH_03470 0.66 +0.5 615,047 - creB NOLOHH_03470 0.66 +0.0 615,087 - creB NOLOHH_03470 0.72 -0.5 615,219 + -1.1 615,219 + +1.6 615,220 - +0.2 615,220 - +0.7 615,280 + +0.9 615,280 + -0.6 615,280 + +1.0 615,281 - -0.6 615,294 + +0.5 615,294 + -1.0 615,394 + creA NOLOHH_03475 0.21 -4.0 615,402 + creA NOLOHH_03475 0.23 -0.8 615,402 + creA NOLOHH_03475 0.23 +0.3 615,402 + creA NOLOHH_03475 0.23 +1.1 615,427 + creA NOLOHH_03475 0.28 -0.5 615,427 + creA NOLOHH_03475 0.28 -0.5 615,428 - creA NOLOHH_03475 0.28 -0.4 615,442 + creA NOLOHH_03475 0.31 -0.4 615,442 + creA NOLOHH_03475 0.31 +1.3 615,443 - creA NOLOHH_03475 0.32 +0.2 615,443 - creA NOLOHH_03475 0.32 -0.5 615,456 - creA NOLOHH_03475 0.34 -0.2 615,458 + creA NOLOHH_03475 0.35 +0.6 615,458 + creA NOLOHH_03475 0.35 -0.1 615,459 - creA NOLOHH_03475 0.35 -3.5 615,459 - creA NOLOHH_03475 0.35 +0.5 615,484 + creA NOLOHH_03475 0.40 +0.1 615,485 - creA NOLOHH_03475 0.41 -1.8 615,571 + creA NOLOHH_03475 0.59 +0.8 615,571 + creA NOLOHH_03475 0.59 +0.8 615,574 + creA NOLOHH_03475 0.59 +0.3 615,600 + creA NOLOHH_03475 0.65 -0.4 615,601 - creA NOLOHH_03475 0.65 +0.4 615,673 + creA NOLOHH_03475 0.80 +0.1 615,678 - creA NOLOHH_03475 0.81 -0.7 615,678 - creA NOLOHH_03475 0.81 +0.4 615,738 - -1.7 615,759 + +0.9 615,785 + -1.2 615,785 + -0.9 615,800 + -2.7 615,800 + -1.6 615,801 - +0.7 615,801 - -0.4 615,801 - -0.4 615,817 + -0.1 615,818 - -3.5 615,823 - +0.8 615,875 + -0.6 615,876 - -0.3 615,880 + +0.8 615,880 + +0.9 615,880 + -0.6 615,926 - -1.9 615,976 + -1.1 616,008 + -0.7 616,073 + robA NOLOHH_03480 0.11 -2.2 616,074 - robA NOLOHH_03480 0.11 -3.3 616,089 + robA NOLOHH_03480 0.13 -3.5 616,102 + robA NOLOHH_03480 0.14 -1.4 616,133 + robA NOLOHH_03480 0.18 -0.1 616,134 - robA NOLOHH_03480 0.18 -2.5 616,134 - robA NOLOHH_03480 0.18 -0.4 616,135 + robA NOLOHH_03480 0.18 -0.4 616,135 + robA NOLOHH_03480 0.18 -3.6 616,135 + robA NOLOHH_03480 0.18 +0.5 616,241 - robA NOLOHH_03480 0.30 -3.1 616,284 - robA NOLOHH_03480 0.35 -2.2 616,409 + robA NOLOHH_03480 0.50 +0.1 616,409 + robA NOLOHH_03480 0.50 +0.0 616,409 + robA NOLOHH_03480 0.50 -0.5 616,409 + robA NOLOHH_03480 0.50 -1.2 616,409 + robA NOLOHH_03480 0.50 +0.5 616,563 + robA NOLOHH_03480 0.67 +0.4 616,563 + robA NOLOHH_03480 0.67 -0.5 616,564 - robA NOLOHH_03480 0.67 -2.9 616,564 - robA NOLOHH_03480 0.67 -2.4 616,568 + robA NOLOHH_03480 0.68 -3.3 616,568 + robA NOLOHH_03480 0.68 -0.4 616,568 + robA NOLOHH_03480 0.68 +0.3 616,568 + robA NOLOHH_03480 0.68 +1.0 616,568 + robA NOLOHH_03480 0.68 -0.1 616,569 - robA NOLOHH_03480 0.68 -3.7 616,569 - robA NOLOHH_03480 0.68 +0.6 616,569 - robA NOLOHH_03480 0.68 -2.3 616,604 + robA NOLOHH_03480 0.72 -1.5 616,605 - robA NOLOHH_03480 0.72 +0.7 616,605 - robA NOLOHH_03480 0.72 -1.2 616,605 - robA NOLOHH_03480 0.72 -4.8 616,605 - robA NOLOHH_03480 0.72 -1.9 616,608 + robA NOLOHH_03480 0.73 -0.2 616,608 + robA NOLOHH_03480 0.73 -0.9 616,609 - robA NOLOHH_03480 0.73 -2.8 616,646 + robA NOLOHH_03480 0.77 +0.4 616,657 + robA NOLOHH_03480 0.78 -1.2 616,661 + robA NOLOHH_03480 0.79 -0.5 616,662 - robA NOLOHH_03480 0.79 -0.8 616,807 + -2.9 616,808 - -1.0 616,861 + +0.3 616,861 + -0.0 616,861 + -0.7 616,861 + +0.2 616,861 + +0.2 616,861 + -1.3 616,862 - -0.5 616,862 - +0.7 616,862 - -0.1 616,940 + NOLOHH_03485 0.15 +0.3 616,956 + NOLOHH_03485 0.17 +0.2 616,957 - NOLOHH_03485 0.18 -0.2 616,965 + NOLOHH_03485 0.19 +0.8 616,966 - NOLOHH_03485 0.19 -1.2 616,975 + NOLOHH_03485 0.20 +0.5 616,975 + NOLOHH_03485 0.20 -0.6 616,976 - NOLOHH_03485 0.21 -2.7 616,976 - NOLOHH_03485 0.21 -4.8 617,074 + NOLOHH_03485 0.36 +0.6 617,145 + NOLOHH_03485 0.47 -0.1 617,146 - NOLOHH_03485 0.47 -3.3 617,215 - NOLOHH_03485 0.57 +0.6 617,215 - NOLOHH_03485 0.57 -0.7 617,242 + NOLOHH_03485 0.62 +0.5 617,242 + NOLOHH_03485 0.62 -0.6 617,243 - NOLOHH_03485 0.62 -0.4 617,340 + NOLOHH_03485 0.77 -1.8 617,340 + NOLOHH_03485 0.77 -2.8 617,434 - -1.5 617,434 - -4.0 617,473 + +0.3 617,473 + -0.9 617,473 + -0.6 617,477 + +0.4 617,477 + -3.7 617,477 + +0.2 617,477 + +0.4 617,477 + -0.0 617,478 - +0.6 617,478 - +0.9 617,478 - -0.2 617,478 - -0.1 617,479 + +0.6 617,479 + -1.3 617,479 + -0.1 617,479 + -1.6 617,479 + +0.4 617,479 + -1.5 617,479 + +2.7 617,480 - -0.1 617,480 - +0.6 617,480 - +2.4 617,480 - +0.1 617,486 - +0.3 617,486 - -0.6 617,503 + -0.3 617,503 + +0.5 617,504 - -0.7 617,505 + -0.1 617,513 + +1.5 617,663 + yjjX NOLOHH_03490 0.24 +1.2 617,735 + yjjX NOLOHH_03490 0.38 +0.9 617,735 + yjjX NOLOHH_03490 0.38 +1.6 617,735 + yjjX NOLOHH_03490 0.38 +1.0
Or see this region's nucleotide sequence