Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuA and leuC1 are separated by 2 nucleotides leuC1 and leuD are separated by 10 nucleotides leuD and setA are separated by 48 nucleotides
NOLOHH_03065: leuA - 2-isopropylmalate synthase, at 527,272 to 528,363
leuA
NOLOHH_03070: leuC1 - 3-isopropylmalate dehydratase large subunit 1, at 528,366 to 529,766
leuC1
NOLOHH_03075: leuD - 3-isopropylmalate dehydratase small subunit, at 529,777 to 530,382
leuD
NOLOHH_03080: setA - sugar efflux transporter SetA, at 530,431 to 531,609
setA
Position (kb) 528
529
530 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 527.399 kb on - strand, within leuA at 527.405 kb on + strand, within leuA at 527.405 kb on + strand, within leuA at 527.406 kb on - strand, within leuA at 527.522 kb on + strand, within leuA at 527.522 kb on + strand, within leuA at 527.582 kb on + strand, within leuA at 527.704 kb on + strand, within leuA at 527.704 kb on + strand, within leuA at 527.704 kb on + strand, within leuA at 527.704 kb on + strand, within leuA at 527.705 kb on - strand, within leuA at 527.743 kb on + strand, within leuA at 527.743 kb on + strand, within leuA at 527.743 kb on + strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.793 kb on + strand, within leuA at 527.794 kb on - strand, within leuA at 527.882 kb on + strand, within leuA at 527.883 kb on - strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.945 kb on - strand, within leuA at 527.945 kb on - strand, within leuA at 527.945 kb on - strand, within leuA at 527.945 kb on - strand, within leuA at 527.945 kb on - strand, within leuA at 528.109 kb on + strand, within leuA at 528.109 kb on + strand, within leuA at 528.109 kb on + strand, within leuA at 528.109 kb on + strand, within leuA at 528.110 kb on - strand, within leuA at 528.260 kb on + strand at 528.344 kb on - strand at 528.344 kb on - strand at 528.347 kb on + strand at 528.348 kb on - strand at 528.348 kb on - strand at 528.361 kb on + strand at 528.361 kb on + strand at 528.371 kb on + strand at 528.382 kb on - strand at 528.411 kb on + strand at 528.411 kb on + strand at 528.411 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.440 kb on - strand at 528.440 kb on - strand at 528.440 kb on - strand at 528.440 kb on - strand at 528.440 kb on - strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.444 kb on - strand at 528.542 kb on + strand, within leuC1 at 528.658 kb on - strand, within leuC1 at 528.676 kb on - strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.695 kb on - strand, within leuC1 at 528.820 kb on + strand, within leuC1 at 528.820 kb on + strand, within leuC1 at 528.821 kb on - strand, within leuC1 at 528.821 kb on - strand, within leuC1 at 528.997 kb on + strand, within leuC1 at 528.997 kb on + strand, within leuC1 at 529.014 kb on - strand, within leuC1 at 529.029 kb on - strand, within leuC1 at 529.085 kb on + strand, within leuC1 at 529.085 kb on + strand, within leuC1 at 529.085 kb on + strand, within leuC1 at 529.085 kb on + strand, within leuC1 at 529.086 kb on - strand, within leuC1 at 529.086 kb on - strand, within leuC1 at 529.089 kb on + strand, within leuC1 at 529.274 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.339 kb on - strand, within leuC1 at 529.339 kb on - strand, within leuC1 at 529.339 kb on - strand, within leuC1 at 529.339 kb on - strand, within leuC1 at 529.430 kb on - strand, within leuC1 at 529.761 kb on - strand at 529.761 kb on - strand at 529.764 kb on + strand at 529.764 kb on + strand at 529.764 kb on + strand at 529.765 kb on - strand at 529.765 kb on - strand at 529.765 kb on - strand at 530.070 kb on + strand, within leuD at 530.115 kb on + strand, within leuD at 530.263 kb on - strand, within leuD at 530.351 kb on - strand at 530.374 kb on - strand at 530.380 kb on + strand at 530.380 kb on + strand at 530.381 kb on - strand at 530.381 kb on - strand at 530.381 kb on - strand at 530.381 kb on - strand at 530.381 kb on - strand at 530.462 kb on - strand at 530.462 kb on - strand at 530.478 kb on + strand at 530.489 kb on - strand at 530.568 kb on + strand, within setA at 530.568 kb on + strand, within setA at 530.568 kb on + strand, within setA at 530.569 kb on - strand, within setA at 530.581 kb on + strand, within setA at 530.582 kb on - strand, within setA at 530.629 kb on + strand, within setA at 530.659 kb on - strand, within setA at 530.662 kb on + strand, within setA at 530.662 kb on + strand, within setA at 530.663 kb on - strand, within setA at 530.663 kb on - strand, within setA at 530.704 kb on - strand, within setA at 530.734 kb on + strand, within setA at 530.752 kb on + strand, within setA at 530.753 kb on - strand, within setA at 530.753 kb on - strand, within setA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 527,399 - leuA NOLOHH_03065 0.12 -2.3 527,405 + leuA NOLOHH_03065 0.12 -3.2 527,405 + leuA NOLOHH_03065 0.12 -5.8 527,406 - leuA NOLOHH_03065 0.12 -4.4 527,522 + leuA NOLOHH_03065 0.23 -3.0 527,522 + leuA NOLOHH_03065 0.23 -3.4 527,582 + leuA NOLOHH_03065 0.28 -4.4 527,704 + leuA NOLOHH_03065 0.40 -2.6 527,704 + leuA NOLOHH_03065 0.40 -4.5 527,704 + leuA NOLOHH_03065 0.40 -4.8 527,704 + leuA NOLOHH_03065 0.40 -4.9 527,705 - leuA NOLOHH_03065 0.40 -0.6 527,743 + leuA NOLOHH_03065 0.43 -3.6 527,743 + leuA NOLOHH_03065 0.43 -3.5 527,743 + leuA NOLOHH_03065 0.43 -5.4 527,771 - leuA NOLOHH_03065 0.46 -4.6 527,771 - leuA NOLOHH_03065 0.46 -4.8 527,771 - leuA NOLOHH_03065 0.46 -5.2 527,771 - leuA NOLOHH_03065 0.46 -4.2 527,771 - leuA NOLOHH_03065 0.46 -3.7 527,771 - leuA NOLOHH_03065 0.46 -3.1 527,793 + leuA NOLOHH_03065 0.48 -2.1 527,794 - leuA NOLOHH_03065 0.48 -3.8 527,882 + leuA NOLOHH_03065 0.56 -2.0 527,883 - leuA NOLOHH_03065 0.56 -2.0 527,940 + leuA NOLOHH_03065 0.61 -3.5 527,940 + leuA NOLOHH_03065 0.61 -5.8 527,940 + leuA NOLOHH_03065 0.61 -4.9 527,940 + leuA NOLOHH_03065 0.61 -2.4 527,940 + leuA NOLOHH_03065 0.61 -4.3 527,940 + leuA NOLOHH_03065 0.61 -4.1 527,940 + leuA NOLOHH_03065 0.61 -2.0 527,941 - leuA NOLOHH_03065 0.61 -5.7 527,941 - leuA NOLOHH_03065 0.61 -3.7 527,941 - leuA NOLOHH_03065 0.61 -2.2 527,941 - leuA NOLOHH_03065 0.61 -4.7 527,941 - leuA NOLOHH_03065 0.61 -4.8 527,941 - leuA NOLOHH_03065 0.61 -1.4 527,944 + leuA NOLOHH_03065 0.62 -4.3 527,944 + leuA NOLOHH_03065 0.62 -4.5 527,944 + leuA NOLOHH_03065 0.62 -5.6 527,944 + leuA NOLOHH_03065 0.62 -5.6 527,944 + leuA NOLOHH_03065 0.62 -5.4 527,944 + leuA NOLOHH_03065 0.62 -5.4 527,944 + leuA NOLOHH_03065 0.62 -4.1 527,944 + leuA NOLOHH_03065 0.62 -4.6 527,944 + leuA NOLOHH_03065 0.62 -0.5 527,944 + leuA NOLOHH_03065 0.62 -5.1 527,944 + leuA NOLOHH_03065 0.62 -3.1 527,944 + leuA NOLOHH_03065 0.62 -5.2 527,944 + leuA NOLOHH_03065 0.62 -4.2 527,944 + leuA NOLOHH_03065 0.62 -4.7 527,945 - leuA NOLOHH_03065 0.62 -3.0 527,945 - leuA NOLOHH_03065 0.62 -4.3 527,945 - leuA NOLOHH_03065 0.62 -3.9 527,945 - leuA NOLOHH_03065 0.62 -4.1 527,945 - leuA NOLOHH_03065 0.62 -3.5 528,109 + leuA NOLOHH_03065 0.77 -4.4 528,109 + leuA NOLOHH_03065 0.77 -2.5 528,109 + leuA NOLOHH_03065 0.77 -3.1 528,109 + leuA NOLOHH_03065 0.77 -3.7 528,110 - leuA NOLOHH_03065 0.77 -5.1 528,260 + -3.9 528,344 - -5.8 528,344 - -5.3 528,347 + +1.5 528,348 - -1.5 528,348 - -4.0 528,361 + -4.9 528,361 + -2.5 528,371 + -4.5 528,382 - -4.5 528,411 + -2.8 528,411 + -2.2 528,411 + -2.7 528,439 + -1.2 528,439 + -4.3 528,439 + -4.9 528,439 + -5.5 528,439 + -4.4 528,439 + -3.5 528,440 - -4.5 528,440 - -4.1 528,440 - -5.3 528,440 - -4.4 528,440 - -1.6 528,441 + -5.9 528,441 + -4.9 528,441 + -5.3 528,441 + -3.5 528,441 + -2.4 528,441 + -4.8 528,441 + -3.9 528,442 - -2.3 528,442 - +0.3 528,442 - -4.4 528,442 - -3.8 528,442 - -2.6 528,442 - -4.5 528,442 - -3.2 528,444 - -3.6 528,542 + leuC1 NOLOHH_03070 0.13 -5.1 528,658 - leuC1 NOLOHH_03070 0.21 -3.5 528,676 - leuC1 NOLOHH_03070 0.22 -5.2 528,694 + leuC1 NOLOHH_03070 0.23 -5.5 528,694 + leuC1 NOLOHH_03070 0.23 -5.7 528,694 + leuC1 NOLOHH_03070 0.23 -5.0 528,694 + leuC1 NOLOHH_03070 0.23 -4.0 528,694 + leuC1 NOLOHH_03070 0.23 -2.2 528,695 - leuC1 NOLOHH_03070 0.23 -4.9 528,820 + leuC1 NOLOHH_03070 0.32 -3.2 528,820 + leuC1 NOLOHH_03070 0.32 -0.8 528,821 - leuC1 NOLOHH_03070 0.32 -3.7 528,821 - leuC1 NOLOHH_03070 0.32 -3.6 528,997 + leuC1 NOLOHH_03070 0.45 -6.1 528,997 + leuC1 NOLOHH_03070 0.45 -5.4 529,014 - leuC1 NOLOHH_03070 0.46 -3.9 529,029 - leuC1 NOLOHH_03070 0.47 -4.4 529,085 + leuC1 NOLOHH_03070 0.51 -3.9 529,085 + leuC1 NOLOHH_03070 0.51 -3.6 529,085 + leuC1 NOLOHH_03070 0.51 -4.8 529,085 + leuC1 NOLOHH_03070 0.51 -3.7 529,086 - leuC1 NOLOHH_03070 0.51 -3.9 529,086 - leuC1 NOLOHH_03070 0.51 -3.1 529,089 + leuC1 NOLOHH_03070 0.52 -4.5 529,274 + leuC1 NOLOHH_03070 0.65 -5.8 529,338 + leuC1 NOLOHH_03070 0.69 -4.1 529,338 + leuC1 NOLOHH_03070 0.69 -4.0 529,338 + leuC1 NOLOHH_03070 0.69 -4.4 529,338 + leuC1 NOLOHH_03070 0.69 -4.2 529,338 + leuC1 NOLOHH_03070 0.69 -3.4 529,339 - leuC1 NOLOHH_03070 0.69 -4.8 529,339 - leuC1 NOLOHH_03070 0.69 -1.4 529,339 - leuC1 NOLOHH_03070 0.69 -2.7 529,339 - leuC1 NOLOHH_03070 0.69 -2.9 529,430 - leuC1 NOLOHH_03070 0.76 -3.7 529,761 - -4.4 529,761 - -3.5 529,764 + -0.2 529,764 + +0.1 529,764 + +0.8 529,765 - -4.6 529,765 - -5.0 529,765 - -4.9 530,070 + leuD NOLOHH_03075 0.48 -5.7 530,115 + leuD NOLOHH_03075 0.56 -5.1 530,263 - leuD NOLOHH_03075 0.80 -4.1 530,351 - -5.4 530,374 - -0.2 530,380 + -0.8 530,380 + -4.4 530,381 - +0.8 530,381 - -0.2 530,381 - +0.8 530,381 - +0.3 530,381 - +0.0 530,462 - +1.1 530,462 - -0.4 530,478 + +1.5 530,489 - +0.2 530,568 + setA NOLOHH_03080 0.12 -1.1 530,568 + setA NOLOHH_03080 0.12 +0.9 530,568 + setA NOLOHH_03080 0.12 +0.3 530,569 - setA NOLOHH_03080 0.12 +1.0 530,581 + setA NOLOHH_03080 0.13 +0.2 530,582 - setA NOLOHH_03080 0.13 +0.4 530,629 + setA NOLOHH_03080 0.17 -0.4 530,659 - setA NOLOHH_03080 0.19 -0.2 530,662 + setA NOLOHH_03080 0.20 +0.5 530,662 + setA NOLOHH_03080 0.20 -0.8 530,663 - setA NOLOHH_03080 0.20 +0.6 530,663 - setA NOLOHH_03080 0.20 +0.3 530,704 - setA NOLOHH_03080 0.23 +0.3 530,734 + setA NOLOHH_03080 0.26 -1.8 530,752 + setA NOLOHH_03080 0.27 +0.0 530,753 - setA NOLOHH_03080 0.27 -0.5 530,753 - setA NOLOHH_03080 0.27 -0.6
Or see this region's nucleotide sequence