Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_03060 and leuA overlap by 1 nucleotides leuA and leuC1 are separated by 2 nucleotides
NOLOHH_03060: NOLOHH_03060 - 2-isopropylmalate synthase, at 525,701 to 527,272
_03060
NOLOHH_03065: leuA - 2-isopropylmalate synthase, at 527,272 to 528,363
leuA
NOLOHH_03070: leuC1 - 3-isopropylmalate dehydratase large subunit 1, at 528,366 to 529,766
leuC1
Position (kb) 527
528
529 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 526.272 kb on + strand, within NOLOHH_03060 at 526.273 kb on - strand, within NOLOHH_03060 at 526.276 kb on + strand, within NOLOHH_03060 at 526.276 kb on + strand, within NOLOHH_03060 at 526.277 kb on - strand, within NOLOHH_03060 at 526.277 kb on - strand, within NOLOHH_03060 at 526.294 kb on + strand, within NOLOHH_03060 at 526.295 kb on - strand, within NOLOHH_03060 at 526.302 kb on + strand, within NOLOHH_03060 at 526.306 kb on + strand, within NOLOHH_03060 at 526.306 kb on + strand, within NOLOHH_03060 at 526.307 kb on - strand, within NOLOHH_03060 at 526.307 kb on - strand, within NOLOHH_03060 at 526.307 kb on - strand, within NOLOHH_03060 at 526.307 kb on - strand, within NOLOHH_03060 at 526.321 kb on - strand, within NOLOHH_03060 at 526.354 kb on - strand, within NOLOHH_03060 at 526.354 kb on - strand, within NOLOHH_03060 at 526.354 kb on - strand, within NOLOHH_03060 at 526.497 kb on + strand, within NOLOHH_03060 at 526.498 kb on - strand, within NOLOHH_03060 at 526.515 kb on + strand, within NOLOHH_03060 at 526.516 kb on - strand, within NOLOHH_03060 at 526.516 kb on - strand, within NOLOHH_03060 at 526.516 kb on - strand, within NOLOHH_03060 at 526.531 kb on + strand, within NOLOHH_03060 at 526.531 kb on + strand, within NOLOHH_03060 at 526.532 kb on - strand, within NOLOHH_03060 at 526.534 kb on + strand, within NOLOHH_03060 at 526.535 kb on - strand, within NOLOHH_03060 at 526.631 kb on + strand, within NOLOHH_03060 at 526.737 kb on - strand, within NOLOHH_03060 at 526.738 kb on + strand, within NOLOHH_03060 at 526.739 kb on - strand, within NOLOHH_03060 at 526.817 kb on + strand, within NOLOHH_03060 at 526.883 kb on + strand, within NOLOHH_03060 at 526.907 kb on - strand, within NOLOHH_03060 at 526.998 kb on - strand, within NOLOHH_03060 at 527.024 kb on + strand, within NOLOHH_03060 at 527.024 kb on + strand, within NOLOHH_03060 at 527.025 kb on - strand, within NOLOHH_03060 at 527.025 kb on - strand, within NOLOHH_03060 at 527.025 kb on - strand, within NOLOHH_03060 at 527.026 kb on + strand, within NOLOHH_03060 at 527.026 kb on + strand, within NOLOHH_03060 at 527.026 kb on + strand, within NOLOHH_03060 at 527.045 kb on + strand, within NOLOHH_03060 at 527.108 kb on + strand, within NOLOHH_03060 at 527.184 kb on + strand at 527.184 kb on + strand at 527.184 kb on + strand at 527.185 kb on - strand at 527.194 kb on + strand at 527.194 kb on + strand at 527.290 kb on - strand at 527.313 kb on + strand at 527.399 kb on - strand, within leuA at 527.405 kb on + strand, within leuA at 527.405 kb on + strand, within leuA at 527.406 kb on - strand, within leuA at 527.522 kb on + strand, within leuA at 527.522 kb on + strand, within leuA at 527.582 kb on + strand, within leuA at 527.704 kb on + strand, within leuA at 527.704 kb on + strand, within leuA at 527.704 kb on + strand, within leuA at 527.704 kb on + strand, within leuA at 527.705 kb on - strand, within leuA at 527.743 kb on + strand, within leuA at 527.743 kb on + strand, within leuA at 527.743 kb on + strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.771 kb on - strand, within leuA at 527.793 kb on + strand, within leuA at 527.794 kb on - strand, within leuA at 527.882 kb on + strand, within leuA at 527.883 kb on - strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.940 kb on + strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.941 kb on - strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.944 kb on + strand, within leuA at 527.945 kb on - strand, within leuA at 527.945 kb on - strand, within leuA at 527.945 kb on - strand, within leuA at 527.945 kb on - strand, within leuA at 527.945 kb on - strand, within leuA at 528.109 kb on + strand, within leuA at 528.109 kb on + strand, within leuA at 528.109 kb on + strand, within leuA at 528.109 kb on + strand, within leuA at 528.110 kb on - strand, within leuA at 528.260 kb on + strand at 528.344 kb on - strand at 528.344 kb on - strand at 528.347 kb on + strand at 528.348 kb on - strand at 528.348 kb on - strand at 528.361 kb on + strand at 528.361 kb on + strand at 528.371 kb on + strand at 528.382 kb on - strand at 528.411 kb on + strand at 528.411 kb on + strand at 528.411 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.439 kb on + strand at 528.440 kb on - strand at 528.440 kb on - strand at 528.440 kb on - strand at 528.440 kb on - strand at 528.440 kb on - strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.441 kb on + strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.442 kb on - strand at 528.444 kb on - strand at 528.542 kb on + strand, within leuC1 at 528.658 kb on - strand, within leuC1 at 528.676 kb on - strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.694 kb on + strand, within leuC1 at 528.695 kb on - strand, within leuC1 at 528.820 kb on + strand, within leuC1 at 528.820 kb on + strand, within leuC1 at 528.821 kb on - strand, within leuC1 at 528.821 kb on - strand, within leuC1 at 528.997 kb on + strand, within leuC1 at 528.997 kb on + strand, within leuC1 at 529.014 kb on - strand, within leuC1 at 529.029 kb on - strand, within leuC1 at 529.085 kb on + strand, within leuC1 at 529.085 kb on + strand, within leuC1 at 529.085 kb on + strand, within leuC1 at 529.085 kb on + strand, within leuC1 at 529.086 kb on - strand, within leuC1 at 529.086 kb on - strand, within leuC1 at 529.089 kb on + strand, within leuC1 at 529.274 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.338 kb on + strand, within leuC1 at 529.339 kb on - strand, within leuC1 at 529.339 kb on - strand, within leuC1 at 529.339 kb on - strand, within leuC1 at 529.339 kb on - strand, within leuC1
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 526,272 + NOLOHH_03060 0.36 -4.0 526,273 - NOLOHH_03060 0.36 -2.6 526,276 + NOLOHH_03060 0.37 -2.4 526,276 + NOLOHH_03060 0.37 -3.6 526,277 - NOLOHH_03060 0.37 -1.8 526,277 - NOLOHH_03060 0.37 -3.8 526,294 + NOLOHH_03060 0.38 -5.5 526,295 - NOLOHH_03060 0.38 -4.5 526,302 + NOLOHH_03060 0.38 -5.1 526,306 + NOLOHH_03060 0.38 -5.8 526,306 + NOLOHH_03060 0.38 -1.5 526,307 - NOLOHH_03060 0.39 -3.1 526,307 - NOLOHH_03060 0.39 -3.6 526,307 - NOLOHH_03060 0.39 -4.7 526,307 - NOLOHH_03060 0.39 -5.0 526,321 - NOLOHH_03060 0.39 -3.7 526,354 - NOLOHH_03060 0.42 -3.9 526,354 - NOLOHH_03060 0.42 -3.6 526,354 - NOLOHH_03060 0.42 -3.2 526,497 + NOLOHH_03060 0.51 -3.7 526,498 - NOLOHH_03060 0.51 -5.1 526,515 + NOLOHH_03060 0.52 -4.8 526,516 - NOLOHH_03060 0.52 -3.3 526,516 - NOLOHH_03060 0.52 -3.3 526,516 - NOLOHH_03060 0.52 -4.6 526,531 + NOLOHH_03060 0.53 -4.0 526,531 + NOLOHH_03060 0.53 -5.2 526,532 - NOLOHH_03060 0.53 -4.5 526,534 + NOLOHH_03060 0.53 -5.5 526,535 - NOLOHH_03060 0.53 -0.9 526,631 + NOLOHH_03060 0.59 -3.6 526,737 - NOLOHH_03060 0.66 -4.0 526,738 + NOLOHH_03060 0.66 -5.9 526,739 - NOLOHH_03060 0.66 -3.4 526,817 + NOLOHH_03060 0.71 -4.7 526,883 + NOLOHH_03060 0.75 -0.0 526,907 - NOLOHH_03060 0.77 -3.2 526,998 - NOLOHH_03060 0.83 -2.7 527,024 + NOLOHH_03060 0.84 +0.0 527,024 + NOLOHH_03060 0.84 -0.6 527,025 - NOLOHH_03060 0.84 -5.3 527,025 - NOLOHH_03060 0.84 -4.5 527,025 - NOLOHH_03060 0.84 -5.1 527,026 + NOLOHH_03060 0.84 -3.8 527,026 + NOLOHH_03060 0.84 -3.9 527,026 + NOLOHH_03060 0.84 -3.9 527,045 + NOLOHH_03060 0.85 -2.8 527,108 + NOLOHH_03060 0.90 -2.4 527,184 + +0.8 527,184 + -0.3 527,184 + -3.8 527,185 - -3.7 527,194 + +0.7 527,194 + -2.3 527,290 - -2.7 527,313 + -4.5 527,399 - leuA NOLOHH_03065 0.12 -2.3 527,405 + leuA NOLOHH_03065 0.12 -3.2 527,405 + leuA NOLOHH_03065 0.12 -5.8 527,406 - leuA NOLOHH_03065 0.12 -4.4 527,522 + leuA NOLOHH_03065 0.23 -3.0 527,522 + leuA NOLOHH_03065 0.23 -3.4 527,582 + leuA NOLOHH_03065 0.28 -4.4 527,704 + leuA NOLOHH_03065 0.40 -2.6 527,704 + leuA NOLOHH_03065 0.40 -4.5 527,704 + leuA NOLOHH_03065 0.40 -4.8 527,704 + leuA NOLOHH_03065 0.40 -4.9 527,705 - leuA NOLOHH_03065 0.40 -0.6 527,743 + leuA NOLOHH_03065 0.43 -3.6 527,743 + leuA NOLOHH_03065 0.43 -3.5 527,743 + leuA NOLOHH_03065 0.43 -5.4 527,771 - leuA NOLOHH_03065 0.46 -4.6 527,771 - leuA NOLOHH_03065 0.46 -4.8 527,771 - leuA NOLOHH_03065 0.46 -5.2 527,771 - leuA NOLOHH_03065 0.46 -4.2 527,771 - leuA NOLOHH_03065 0.46 -3.7 527,771 - leuA NOLOHH_03065 0.46 -3.1 527,793 + leuA NOLOHH_03065 0.48 -2.1 527,794 - leuA NOLOHH_03065 0.48 -3.8 527,882 + leuA NOLOHH_03065 0.56 -2.0 527,883 - leuA NOLOHH_03065 0.56 -2.0 527,940 + leuA NOLOHH_03065 0.61 -3.5 527,940 + leuA NOLOHH_03065 0.61 -5.8 527,940 + leuA NOLOHH_03065 0.61 -4.9 527,940 + leuA NOLOHH_03065 0.61 -2.4 527,940 + leuA NOLOHH_03065 0.61 -4.3 527,940 + leuA NOLOHH_03065 0.61 -4.1 527,940 + leuA NOLOHH_03065 0.61 -2.0 527,941 - leuA NOLOHH_03065 0.61 -5.7 527,941 - leuA NOLOHH_03065 0.61 -3.7 527,941 - leuA NOLOHH_03065 0.61 -2.2 527,941 - leuA NOLOHH_03065 0.61 -4.7 527,941 - leuA NOLOHH_03065 0.61 -4.8 527,941 - leuA NOLOHH_03065 0.61 -1.4 527,944 + leuA NOLOHH_03065 0.62 -4.3 527,944 + leuA NOLOHH_03065 0.62 -4.5 527,944 + leuA NOLOHH_03065 0.62 -5.6 527,944 + leuA NOLOHH_03065 0.62 -5.6 527,944 + leuA NOLOHH_03065 0.62 -5.4 527,944 + leuA NOLOHH_03065 0.62 -5.4 527,944 + leuA NOLOHH_03065 0.62 -4.1 527,944 + leuA NOLOHH_03065 0.62 -4.6 527,944 + leuA NOLOHH_03065 0.62 -0.5 527,944 + leuA NOLOHH_03065 0.62 -5.1 527,944 + leuA NOLOHH_03065 0.62 -3.1 527,944 + leuA NOLOHH_03065 0.62 -5.2 527,944 + leuA NOLOHH_03065 0.62 -4.2 527,944 + leuA NOLOHH_03065 0.62 -4.7 527,945 - leuA NOLOHH_03065 0.62 -3.0 527,945 - leuA NOLOHH_03065 0.62 -4.3 527,945 - leuA NOLOHH_03065 0.62 -3.9 527,945 - leuA NOLOHH_03065 0.62 -4.1 527,945 - leuA NOLOHH_03065 0.62 -3.5 528,109 + leuA NOLOHH_03065 0.77 -4.4 528,109 + leuA NOLOHH_03065 0.77 -2.5 528,109 + leuA NOLOHH_03065 0.77 -3.1 528,109 + leuA NOLOHH_03065 0.77 -3.7 528,110 - leuA NOLOHH_03065 0.77 -5.1 528,260 + -3.9 528,344 - -5.8 528,344 - -5.3 528,347 + +1.5 528,348 - -1.5 528,348 - -4.0 528,361 + -4.9 528,361 + -2.5 528,371 + -4.5 528,382 - -4.5 528,411 + -2.8 528,411 + -2.2 528,411 + -2.7 528,439 + -1.2 528,439 + -4.3 528,439 + -4.9 528,439 + -5.5 528,439 + -4.4 528,439 + -3.5 528,440 - -4.5 528,440 - -4.1 528,440 - -5.3 528,440 - -4.4 528,440 - -1.6 528,441 + -5.9 528,441 + -4.9 528,441 + -5.3 528,441 + -3.5 528,441 + -2.4 528,441 + -4.8 528,441 + -3.9 528,442 - -2.3 528,442 - +0.3 528,442 - -4.4 528,442 - -3.8 528,442 - -2.6 528,442 - -4.5 528,442 - -3.2 528,444 - -3.6 528,542 + leuC1 NOLOHH_03070 0.13 -5.1 528,658 - leuC1 NOLOHH_03070 0.21 -3.5 528,676 - leuC1 NOLOHH_03070 0.22 -5.2 528,694 + leuC1 NOLOHH_03070 0.23 -5.5 528,694 + leuC1 NOLOHH_03070 0.23 -5.7 528,694 + leuC1 NOLOHH_03070 0.23 -5.0 528,694 + leuC1 NOLOHH_03070 0.23 -4.0 528,694 + leuC1 NOLOHH_03070 0.23 -2.2 528,695 - leuC1 NOLOHH_03070 0.23 -4.9 528,820 + leuC1 NOLOHH_03070 0.32 -3.2 528,820 + leuC1 NOLOHH_03070 0.32 -0.8 528,821 - leuC1 NOLOHH_03070 0.32 -3.7 528,821 - leuC1 NOLOHH_03070 0.32 -3.6 528,997 + leuC1 NOLOHH_03070 0.45 -6.1 528,997 + leuC1 NOLOHH_03070 0.45 -5.4 529,014 - leuC1 NOLOHH_03070 0.46 -3.9 529,029 - leuC1 NOLOHH_03070 0.47 -4.4 529,085 + leuC1 NOLOHH_03070 0.51 -3.9 529,085 + leuC1 NOLOHH_03070 0.51 -3.6 529,085 + leuC1 NOLOHH_03070 0.51 -4.8 529,085 + leuC1 NOLOHH_03070 0.51 -3.7 529,086 - leuC1 NOLOHH_03070 0.51 -3.9 529,086 - leuC1 NOLOHH_03070 0.51 -3.1 529,089 + leuC1 NOLOHH_03070 0.52 -4.5 529,274 + leuC1 NOLOHH_03070 0.65 -5.8 529,338 + leuC1 NOLOHH_03070 0.69 -4.1 529,338 + leuC1 NOLOHH_03070 0.69 -4.0 529,338 + leuC1 NOLOHH_03070 0.69 -4.4 529,338 + leuC1 NOLOHH_03070 0.69 -4.2 529,338 + leuC1 NOLOHH_03070 0.69 -3.4 529,339 - leuC1 NOLOHH_03070 0.69 -4.8 529,339 - leuC1 NOLOHH_03070 0.69 -1.4 529,339 - leuC1 NOLOHH_03070 0.69 -2.7 529,339 - leuC1 NOLOHH_03070 0.69 -2.9
Or see this region's nucleotide sequence