Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pcnB and folK overlap by 4 nucleotides folK and yadN are separated by 369 nucleotides yadN and yadV are separated by 104 nucleotides yadV and htrE are separated by 34 nucleotides
NOLOHH_02700: pcnB - polynucleotide adenylyltransferase PcnB, at 450,457 to 451,821
pcnB
NOLOHH_02705: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 451,818 to 452,297
folK
NOLOHH_02710: yadN - Uncharacterized fimbrial-like protein YadN, at 452,667 to 453,251
yadN
NOLOHH_02715: yadV - fimbrial chaperone, at 453,356 to 454,096
yadV
NOLOHH_02720: htrE - Yad fimbria usher protein HtrE, at 454,131 to 456,731
htrE
Position (kb) 452
453
454 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 451.737 kb on + strand at 451.830 kb on + strand at 452.264 kb on + strand at 452.264 kb on + strand at 452.265 kb on - strand at 452.702 kb on + strand at 453.114 kb on + strand, within yadN at 453.172 kb on - strand, within yadN at 453.239 kb on + strand at 453.284 kb on - strand at 453.376 kb on + strand at 453.377 kb on - strand at 453.459 kb on + strand, within yadV at 453.460 kb on - strand, within yadV at 453.461 kb on + strand, within yadV at 453.572 kb on - strand, within yadV at 453.575 kb on - strand, within yadV at 453.642 kb on + strand, within yadV at 453.643 kb on - strand, within yadV at 453.643 kb on - strand, within yadV at 453.648 kb on - strand, within yadV at 453.648 kb on - strand, within yadV at 453.697 kb on + strand, within yadV at 453.778 kb on + strand, within yadV at 453.779 kb on - strand, within yadV at 453.780 kb on + strand, within yadV at 453.781 kb on - strand, within yadV at 453.868 kb on + strand, within yadV at 453.902 kb on + strand, within yadV at 453.905 kb on + strand, within yadV at 453.905 kb on + strand, within yadV at 453.905 kb on + strand, within yadV at 453.905 kb on + strand, within yadV at 453.906 kb on - strand, within yadV at 453.906 kb on - strand, within yadV at 453.906 kb on - strand, within yadV at 453.906 kb on - strand, within yadV at 453.906 kb on - strand, within yadV at 453.916 kb on + strand, within yadV at 454.047 kb on - strand at 454.054 kb on + strand at 454.081 kb on + strand at 454.109 kb on - strand at 454.110 kb on + strand at 454.139 kb on - strand at 454.160 kb on + strand at 454.161 kb on - strand at 454.236 kb on + strand at 454.237 kb on - strand at 454.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 451,737 + -1.4 451,830 + -2.3 452,264 + +0.1 452,264 + +1.0 452,265 - -0.7 452,702 + -1.3 453,114 + yadN NOLOHH_02710 0.76 -0.3 453,172 - yadN NOLOHH_02710 0.86 -2.1 453,239 + -1.1 453,284 - -1.2 453,376 + +0.7 453,377 - -1.1 453,459 + yadV NOLOHH_02715 0.14 -0.3 453,460 - yadV NOLOHH_02715 0.14 +1.2 453,461 + yadV NOLOHH_02715 0.14 +0.7 453,572 - yadV NOLOHH_02715 0.29 -1.8 453,575 - yadV NOLOHH_02715 0.30 -0.7 453,642 + yadV NOLOHH_02715 0.39 +0.1 453,643 - yadV NOLOHH_02715 0.39 +0.2 453,643 - yadV NOLOHH_02715 0.39 +0.7 453,648 - yadV NOLOHH_02715 0.39 -1.7 453,648 - yadV NOLOHH_02715 0.39 -2.8 453,697 + yadV NOLOHH_02715 0.46 -3.8 453,778 + yadV NOLOHH_02715 0.57 +1.8 453,779 - yadV NOLOHH_02715 0.57 -0.0 453,780 + yadV NOLOHH_02715 0.57 -2.8 453,781 - yadV NOLOHH_02715 0.57 -3.4 453,868 + yadV NOLOHH_02715 0.69 -0.8 453,902 + yadV NOLOHH_02715 0.74 -0.6 453,905 + yadV NOLOHH_02715 0.74 -0.1 453,905 + yadV NOLOHH_02715 0.74 +0.5 453,905 + yadV NOLOHH_02715 0.74 +0.6 453,905 + yadV NOLOHH_02715 0.74 +0.3 453,906 - yadV NOLOHH_02715 0.74 -1.7 453,906 - yadV NOLOHH_02715 0.74 +1.5 453,906 - yadV NOLOHH_02715 0.74 -2.3 453,906 - yadV NOLOHH_02715 0.74 -1.0 453,906 - yadV NOLOHH_02715 0.74 +1.0 453,916 + yadV NOLOHH_02715 0.76 +1.6 454,047 - -0.8 454,054 + +2.1 454,081 + +1.8 454,109 - -0.4 454,110 + +0.9 454,139 - +2.8 454,160 + -0.1 454,161 - +1.0 454,236 + -0.9 454,237 - -0.5 454,244 + +1.0
Or see this region's nucleotide sequence