Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt paoD and yagP overlap by 22 nucleotides yagP and Thr_trna are separated by 126 nucleotides Thr_trna and proA are separated by 114 nucleotides proA and proB are separated by 11 nucleotides
NOLOHH_02030: paoD - molybdenum cofactor insertion chaperone PaoD, at 314,707 to 315,663
paoD
NOLOHH_02035: yagP - Putative LysR family substrate binding domain-containing protein YagP, at 315,642 to 316,052
yagP
NOLOHH_02040: Thr_trna - tRNA-Thr(cgt), at 316,179 to 316,254
_trna
NOLOHH_02045: proA - glutamate-5-semialdehyde dehydrogenase, at 316,369 to 317,622
proA
NOLOHH_02050: proB - Glutamate 5-kinase, at 317,634 to 318,737
proB
Position (kb) 316
317
318 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 315.482 kb on + strand, within paoD at 315.483 kb on - strand, within paoD at 315.483 kb on - strand, within paoD at 315.483 kb on - strand, within paoD at 315.554 kb on + strand, within paoD at 315.580 kb on - strand at 315.617 kb on + strand at 315.618 kb on - strand at 315.618 kb on - strand at 315.711 kb on - strand, within yagP at 315.716 kb on + strand, within yagP at 315.716 kb on + strand, within yagP at 315.716 kb on + strand, within yagP at 315.717 kb on - strand, within yagP at 315.822 kb on - strand, within yagP at 315.900 kb on + strand, within yagP at 315.900 kb on + strand, within yagP at 315.901 kb on - strand, within yagP at 315.902 kb on + strand, within yagP at 315.902 kb on + strand, within yagP at 315.902 kb on + strand, within yagP at 315.903 kb on - strand, within yagP at 315.903 kb on - strand, within yagP at 315.922 kb on + strand, within yagP at 315.922 kb on + strand, within yagP at 315.963 kb on + strand, within yagP at 315.964 kb on - strand, within yagP at 315.964 kb on - strand, within yagP at 315.969 kb on + strand, within yagP at 315.969 kb on + strand, within yagP at 315.969 kb on + strand, within yagP at 315.970 kb on - strand, within yagP at 315.970 kb on - strand, within yagP at 315.990 kb on - strand, within yagP at 316.020 kb on + strand at 316.020 kb on + strand at 316.020 kb on + strand at 316.021 kb on - strand at 316.050 kb on + strand at 316.054 kb on + strand at 316.054 kb on + strand at 316.054 kb on + strand at 316.055 kb on - strand at 316.055 kb on - strand at 316.055 kb on - strand at 316.087 kb on + strand at 316.088 kb on - strand at 316.205 kb on - strand, within Thr_trna at 316.247 kb on - strand at 316.247 kb on - strand at 316.385 kb on + strand at 316.386 kb on - strand at 316.386 kb on - strand at 316.386 kb on - strand at 316.386 kb on - strand at 316.409 kb on + strand at 316.409 kb on + strand at 316.410 kb on - strand at 316.410 kb on - strand at 316.410 kb on - strand at 316.507 kb on - strand, within proA at 316.530 kb on - strand, within proA at 316.530 kb on - strand, within proA at 316.530 kb on - strand, within proA at 316.530 kb on - strand, within proA at 316.675 kb on + strand, within proA at 316.698 kb on - strand, within proA at 316.771 kb on + strand, within proA at 316.772 kb on - strand, within proA at 316.804 kb on + strand, within proA at 316.860 kb on + strand, within proA at 316.861 kb on - strand, within proA at 316.861 kb on - strand, within proA at 316.861 kb on - strand, within proA at 316.863 kb on + strand, within proA at 316.863 kb on + strand, within proA at 316.863 kb on + strand, within proA at 316.863 kb on + strand, within proA at 316.864 kb on - strand, within proA at 316.864 kb on - strand, within proA at 316.864 kb on - strand, within proA at 316.864 kb on - strand, within proA at 316.864 kb on - strand, within proA at 316.864 kb on - strand, within proA at 316.864 kb on - strand, within proA at 316.907 kb on - strand, within proA at 316.907 kb on - strand, within proA at 316.940 kb on + strand, within proA at 316.940 kb on + strand, within proA at 316.940 kb on + strand, within proA at 316.941 kb on - strand, within proA at 316.941 kb on - strand, within proA at 316.941 kb on - strand, within proA at 316.944 kb on + strand, within proA at 316.945 kb on - strand, within proA at 316.952 kb on - strand, within proA at 316.952 kb on - strand, within proA at 316.958 kb on - strand, within proA at 316.960 kb on - strand, within proA at 317.004 kb on + strand, within proA at 317.005 kb on - strand, within proA at 317.005 kb on - strand, within proA at 317.045 kb on + strand, within proA at 317.045 kb on + strand, within proA at 317.045 kb on + strand, within proA at 317.046 kb on - strand, within proA at 317.046 kb on - strand, within proA at 317.050 kb on - strand, within proA at 317.050 kb on - strand, within proA at 317.055 kb on + strand, within proA at 317.280 kb on + strand, within proA at 317.329 kb on + strand, within proA at 317.330 kb on - strand, within proA at 317.345 kb on - strand, within proA at 317.581 kb on - strand at 317.691 kb on + strand at 317.691 kb on + strand at 317.692 kb on - strand at 317.726 kb on + strand at 317.837 kb on + strand, within proB at 317.837 kb on + strand, within proB at 317.837 kb on + strand, within proB at 317.838 kb on - strand, within proB at 317.838 kb on - strand, within proB at 317.838 kb on - strand, within proB at 317.838 kb on - strand, within proB at 317.898 kb on + strand, within proB at 317.898 kb on + strand, within proB at 318.042 kb on - strand, within proB at 318.214 kb on + strand, within proB at 318.214 kb on + strand, within proB at 318.215 kb on - strand, within proB at 318.215 kb on - strand, within proB at 318.215 kb on - strand, within proB at 318.215 kb on - strand, within proB at 318.305 kb on + strand, within proB at 318.305 kb on + strand, within proB at 318.306 kb on - strand, within proB at 318.343 kb on - strand, within proB at 318.600 kb on - strand, within proB at 318.600 kb on - strand, within proB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 315,482 + paoD NOLOHH_02030 0.81 +1.1 315,483 - paoD NOLOHH_02030 0.81 -0.2 315,483 - paoD NOLOHH_02030 0.81 +0.1 315,483 - paoD NOLOHH_02030 0.81 +3.3 315,554 + paoD NOLOHH_02030 0.89 +0.8 315,580 - +0.5 315,617 + -0.8 315,618 - +0.2 315,618 - -0.7 315,711 - yagP NOLOHH_02035 0.17 +0.6 315,716 + yagP NOLOHH_02035 0.18 -0.5 315,716 + yagP NOLOHH_02035 0.18 -0.4 315,716 + yagP NOLOHH_02035 0.18 +0.5 315,717 - yagP NOLOHH_02035 0.18 +0.9 315,822 - yagP NOLOHH_02035 0.44 +1.1 315,900 + yagP NOLOHH_02035 0.63 +1.5 315,900 + yagP NOLOHH_02035 0.63 -1.5 315,901 - yagP NOLOHH_02035 0.63 -3.1 315,902 + yagP NOLOHH_02035 0.63 +0.4 315,902 + yagP NOLOHH_02035 0.63 -0.0 315,902 + yagP NOLOHH_02035 0.63 +1.0 315,903 - yagP NOLOHH_02035 0.64 -1.0 315,903 - yagP NOLOHH_02035 0.64 +0.1 315,922 + yagP NOLOHH_02035 0.68 -2.7 315,922 + yagP NOLOHH_02035 0.68 -0.4 315,963 + yagP NOLOHH_02035 0.78 +0.3 315,964 - yagP NOLOHH_02035 0.78 +0.5 315,964 - yagP NOLOHH_02035 0.78 +0.6 315,969 + yagP NOLOHH_02035 0.80 -0.1 315,969 + yagP NOLOHH_02035 0.80 -0.5 315,969 + yagP NOLOHH_02035 0.80 -4.0 315,970 - yagP NOLOHH_02035 0.80 -0.0 315,970 - yagP NOLOHH_02035 0.80 +0.0 315,990 - yagP NOLOHH_02035 0.85 +1.0 316,020 + +0.6 316,020 + +0.4 316,020 + +3.6 316,021 - +1.7 316,050 + +0.1 316,054 + -0.3 316,054 + -0.5 316,054 + +0.6 316,055 - -0.4 316,055 - +0.3 316,055 - +0.7 316,087 + -0.2 316,088 - -0.7 316,205 - Thr_trna NOLOHH_02040 0.34 -2.7 316,247 - +0.7 316,247 - +0.6 316,385 + -3.0 316,386 - -0.2 316,386 - -4.4 316,386 - -1.4 316,386 - -1.5 316,409 + -3.6 316,409 + -3.4 316,410 - -4.5 316,410 - -3.8 316,410 - -4.1 316,507 - proA NOLOHH_02045 0.11 -5.1 316,530 - proA NOLOHH_02045 0.13 -5.5 316,530 - proA NOLOHH_02045 0.13 -4.9 316,530 - proA NOLOHH_02045 0.13 -4.2 316,530 - proA NOLOHH_02045 0.13 -4.6 316,675 + proA NOLOHH_02045 0.24 -4.4 316,698 - proA NOLOHH_02045 0.26 -2.4 316,771 + proA NOLOHH_02045 0.32 -1.0 316,772 - proA NOLOHH_02045 0.32 -3.2 316,804 + proA NOLOHH_02045 0.35 -1.3 316,860 + proA NOLOHH_02045 0.39 -2.8 316,861 - proA NOLOHH_02045 0.39 -3.4 316,861 - proA NOLOHH_02045 0.39 -3.7 316,861 - proA NOLOHH_02045 0.39 -2.8 316,863 + proA NOLOHH_02045 0.39 -1.6 316,863 + proA NOLOHH_02045 0.39 -2.7 316,863 + proA NOLOHH_02045 0.39 -4.4 316,863 + proA NOLOHH_02045 0.39 -3.7 316,864 - proA NOLOHH_02045 0.39 -5.1 316,864 - proA NOLOHH_02045 0.39 -4.2 316,864 - proA NOLOHH_02045 0.39 -5.4 316,864 - proA NOLOHH_02045 0.39 -3.2 316,864 - proA NOLOHH_02045 0.39 -4.3 316,864 - proA NOLOHH_02045 0.39 -4.6 316,864 - proA NOLOHH_02045 0.39 -4.4 316,907 - proA NOLOHH_02045 0.43 -3.7 316,907 - proA NOLOHH_02045 0.43 -5.3 316,940 + proA NOLOHH_02045 0.46 -2.6 316,940 + proA NOLOHH_02045 0.46 -3.3 316,940 + proA NOLOHH_02045 0.46 +1.3 316,941 - proA NOLOHH_02045 0.46 -2.1 316,941 - proA NOLOHH_02045 0.46 -4.3 316,941 - proA NOLOHH_02045 0.46 -4.3 316,944 + proA NOLOHH_02045 0.46 -2.2 316,945 - proA NOLOHH_02045 0.46 -3.8 316,952 - proA NOLOHH_02045 0.46 -2.8 316,952 - proA NOLOHH_02045 0.46 -4.2 316,958 - proA NOLOHH_02045 0.47 -5.4 316,960 - proA NOLOHH_02045 0.47 -1.4 317,004 + proA NOLOHH_02045 0.51 -4.2 317,005 - proA NOLOHH_02045 0.51 -3.6 317,005 - proA NOLOHH_02045 0.51 -4.5 317,045 + proA NOLOHH_02045 0.54 -3.7 317,045 + proA NOLOHH_02045 0.54 -2.2 317,045 + proA NOLOHH_02045 0.54 -2.6 317,046 - proA NOLOHH_02045 0.54 -1.2 317,046 - proA NOLOHH_02045 0.54 -3.1 317,050 - proA NOLOHH_02045 0.54 -4.0 317,050 - proA NOLOHH_02045 0.54 -3.4 317,055 + proA NOLOHH_02045 0.55 -3.3 317,280 + proA NOLOHH_02045 0.73 -2.3 317,329 + proA NOLOHH_02045 0.77 -3.0 317,330 - proA NOLOHH_02045 0.77 -1.9 317,345 - proA NOLOHH_02045 0.78 -1.0 317,581 - -2.7 317,691 + -3.1 317,691 + -3.3 317,692 - -5.0 317,726 + -4.9 317,837 + proB NOLOHH_02050 0.18 -1.7 317,837 + proB NOLOHH_02050 0.18 -3.6 317,837 + proB NOLOHH_02050 0.18 -3.5 317,838 - proB NOLOHH_02050 0.18 -5.2 317,838 - proB NOLOHH_02050 0.18 -3.9 317,838 - proB NOLOHH_02050 0.18 -5.8 317,838 - proB NOLOHH_02050 0.18 -3.8 317,898 + proB NOLOHH_02050 0.24 -3.4 317,898 + proB NOLOHH_02050 0.24 -2.7 318,042 - proB NOLOHH_02050 0.37 +0.5 318,214 + proB NOLOHH_02050 0.53 -3.9 318,214 + proB NOLOHH_02050 0.53 -2.4 318,215 - proB NOLOHH_02050 0.53 -3.8 318,215 - proB NOLOHH_02050 0.53 -2.9 318,215 - proB NOLOHH_02050 0.53 -3.7 318,215 - proB NOLOHH_02050 0.53 -2.1 318,305 + proB NOLOHH_02050 0.61 -3.3 318,305 + proB NOLOHH_02050 0.61 -5.0 318,306 - proB NOLOHH_02050 0.61 -3.0 318,343 - proB NOLOHH_02050 0.64 -3.0 318,600 - proB NOLOHH_02050 0.88 -5.1 318,600 - proB NOLOHH_02050 0.88 -2.2
Or see this region's nucleotide sequence