Strain Fitness in Escherichia coli ECOR27 around NOLOHH_01910

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_01905 and lutC are separated by 245 nucleotideslutC and ykgF overlap by 8 nucleotides NOLOHH_01905: NOLOHH_01905 - Uncharacterized protein YkgH, at 284,930 to 285,595 _01905 NOLOHH_01910: lutC - lactate utilization protein C, at 285,841 to 286,536 lutC NOLOHH_01915: ykgF - LutB/LldF family L-lactate oxidation iron-sulfur protein, at 286,529 to 287,956 ykgF Position (kb) 285 286 287Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 284.927 kb on - strandat 285.231 kb on + strand, within NOLOHH_01905at 285.285 kb on + strand, within NOLOHH_01905at 285.329 kb on + strand, within NOLOHH_01905at 285.629 kb on + strandat 285.697 kb on + strandat 285.801 kb on + strandat 285.833 kb on + strandat 285.834 kb on - strandat 285.864 kb on - strandat 285.945 kb on + strand, within lutCat 286.023 kb on + strand, within lutCat 286.024 kb on - strand, within lutCat 286.033 kb on - strand, within lutCat 286.033 kb on - strand, within lutCat 286.124 kb on - strand, within lutCat 286.139 kb on + strand, within lutCat 286.140 kb on - strand, within lutCat 286.140 kb on - strand, within lutCat 286.155 kb on + strand, within lutCat 286.303 kb on - strand, within lutCat 286.313 kb on - strand, within lutCat 286.365 kb on + strand, within lutCat 286.366 kb on - strand, within lutCat 286.366 kb on - strand, within lutCat 286.366 kb on - strand, within lutCat 286.366 kb on - strand, within lutCat 286.413 kb on + strand, within lutCat 286.439 kb on + strand, within lutCat 286.440 kb on - strand, within lutCat 286.440 kb on - strand, within lutCat 286.440 kb on - strand, within lutCat 286.440 kb on - strand, within lutCat 286.440 kb on - strand, within lutCat 286.565 kb on - strandat 286.574 kb on - strandat 286.628 kb on - strandat 286.667 kb on - strandat 286.727 kb on - strand, within ykgFat 286.832 kb on - strand, within ykgFat 286.892 kb on - strand, within ykgFat 286.900 kb on + strand, within ykgFat 286.952 kb on - strand, within ykgFat 286.952 kb on - strand, within ykgFat 286.952 kb on - strand, within ykgFat 286.983 kb on + strand, within ykgFat 286.996 kb on + strand, within ykgFat 286.997 kb on - strand, within ykgFat 286.997 kb on - strand, within ykgFat 286.997 kb on - strand, within ykgFat 286.997 kb on - strand, within ykgFat 287.002 kb on + strand, within ykgFat 287.002 kb on + strand, within ykgFat 287.002 kb on + strand, within ykgFat 287.003 kb on - strand, within ykgFat 287.003 kb on - strand, within ykgFat 287.003 kb on - strand, within ykgFat 287.021 kb on - strand, within ykgFat 287.021 kb on - strand, within ykgFat 287.148 kb on + strand, within ykgFat 287.149 kb on - strand, within ykgFat 287.199 kb on - strand, within ykgFat 287.199 kb on - strand, within ykgFat 287.199 kb on - strand, within ykgFat 287.199 kb on - strand, within ykgFat 287.199 kb on - strand, within ykgFat 287.199 kb on - strand, within ykgFat 287.204 kb on + strand, within ykgFat 287.205 kb on - strand, within ykgFat 287.205 kb on - strand, within ykgFat 287.205 kb on - strand, within ykgFat 287.228 kb on - strand, within ykgFat 287.261 kb on - strand, within ykgFat 287.288 kb on - strand, within ykgFat 287.339 kb on - strand, within ykgFat 287.351 kb on - strand, within ykgFat 287.354 kb on + strand, within ykgFat 287.434 kb on - strand, within ykgFat 287.451 kb on - strand, within ykgFat 287.479 kb on + strand, within ykgFat 287.480 kb on - strand, within ykgFat 287.480 kb on - strand, within ykgFat 287.534 kb on - strand, within ykgF

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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284,927 - -0.7
285,231 + NOLOHH_01905 0.45 -0.9
285,285 + NOLOHH_01905 0.53 +0.9
285,329 + NOLOHH_01905 0.60 -0.5
285,629 + -0.9
285,697 + +0.7
285,801 + -2.6
285,833 + -4.0
285,834 - -1.0
285,864 - -3.4
285,945 + lutC NOLOHH_01910 0.15 +1.0
286,023 + lutC NOLOHH_01910 0.26 -1.6
286,024 - lutC NOLOHH_01910 0.26 -0.9
286,033 - lutC NOLOHH_01910 0.28 -0.4
286,033 - lutC NOLOHH_01910 0.28 +0.5
286,124 - lutC NOLOHH_01910 0.41 +1.0
286,139 + lutC NOLOHH_01910 0.43 -2.9
286,140 - lutC NOLOHH_01910 0.43 +0.1
286,140 - lutC NOLOHH_01910 0.43 +0.5
286,155 + lutC NOLOHH_01910 0.45 -0.2
286,303 - lutC NOLOHH_01910 0.66 +0.0
286,313 - lutC NOLOHH_01910 0.68 -3.9
286,365 + lutC NOLOHH_01910 0.75 -0.3
286,366 - lutC NOLOHH_01910 0.75 -0.5
286,366 - lutC NOLOHH_01910 0.75 -0.7
286,366 - lutC NOLOHH_01910 0.75 -1.7
286,366 - lutC NOLOHH_01910 0.75 +0.6
286,413 + lutC NOLOHH_01910 0.82 +1.9
286,439 + lutC NOLOHH_01910 0.86 -0.3
286,440 - lutC NOLOHH_01910 0.86 -1.7
286,440 - lutC NOLOHH_01910 0.86 +0.2
286,440 - lutC NOLOHH_01910 0.86 -1.1
286,440 - lutC NOLOHH_01910 0.86 +1.8
286,440 - lutC NOLOHH_01910 0.86 -0.0
286,565 - +0.1
286,574 - -4.0
286,628 - +0.5
286,667 - -0.8
286,727 - ykgF NOLOHH_01915 0.14 -1.8
286,832 - ykgF NOLOHH_01915 0.21 -0.1
286,892 - ykgF NOLOHH_01915 0.25 -0.5
286,900 + ykgF NOLOHH_01915 0.26 -0.4
286,952 - ykgF NOLOHH_01915 0.30 +1.5
286,952 - ykgF NOLOHH_01915 0.30 +0.2
286,952 - ykgF NOLOHH_01915 0.30 +1.1
286,983 + ykgF NOLOHH_01915 0.32 +0.4
286,996 + ykgF NOLOHH_01915 0.33 +0.1
286,997 - ykgF NOLOHH_01915 0.33 +0.2
286,997 - ykgF NOLOHH_01915 0.33 +2.1
286,997 - ykgF NOLOHH_01915 0.33 +0.6
286,997 - ykgF NOLOHH_01915 0.33 -1.0
287,002 + ykgF NOLOHH_01915 0.33 +0.1
287,002 + ykgF NOLOHH_01915 0.33 -0.6
287,002 + ykgF NOLOHH_01915 0.33 -0.3
287,003 - ykgF NOLOHH_01915 0.33 -0.7
287,003 - ykgF NOLOHH_01915 0.33 +1.6
287,003 - ykgF NOLOHH_01915 0.33 +2.1
287,021 - ykgF NOLOHH_01915 0.34 +0.0
287,021 - ykgF NOLOHH_01915 0.34 -0.3
287,148 + ykgF NOLOHH_01915 0.43 -2.3
287,149 - ykgF NOLOHH_01915 0.43 +0.5
287,199 - ykgF NOLOHH_01915 0.47 -1.7
287,199 - ykgF NOLOHH_01915 0.47 +0.7
287,199 - ykgF NOLOHH_01915 0.47 +0.7
287,199 - ykgF NOLOHH_01915 0.47 -2.1
287,199 - ykgF NOLOHH_01915 0.47 -1.2
287,199 - ykgF NOLOHH_01915 0.47 +0.3
287,204 + ykgF NOLOHH_01915 0.47 +1.3
287,205 - ykgF NOLOHH_01915 0.47 -0.2
287,205 - ykgF NOLOHH_01915 0.47 -2.3
287,205 - ykgF NOLOHH_01915 0.47 +0.8
287,228 - ykgF NOLOHH_01915 0.49 -0.1
287,261 - ykgF NOLOHH_01915 0.51 -0.2
287,288 - ykgF NOLOHH_01915 0.53 -2.1
287,339 - ykgF NOLOHH_01915 0.57 +0.4
287,351 - ykgF NOLOHH_01915 0.58 +1.5
287,354 + ykgF NOLOHH_01915 0.58 -1.1
287,434 - ykgF NOLOHH_01915 0.63 +0.7
287,451 - ykgF NOLOHH_01915 0.65 +1.5
287,479 + ykgF NOLOHH_01915 0.67 -0.6
287,480 - ykgF NOLOHH_01915 0.67 +1.0
287,480 - ykgF NOLOHH_01915 0.67 +0.3
287,534 - ykgF NOLOHH_01915 0.70 -0.0

Or see this region's nucleotide sequence