Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cyoB and cyoC overlap by 11 nucleotides cyoC and cyoD overlap by 1 nucleotides cyoD and cyoE are separated by 11 nucleotides
NOLOHH_01300: cyoB - cytochrome o ubiquinol oxidase subunit I, at 153,293 to 155,284
cyoB
NOLOHH_01305: cyoC - cytochrome o ubiquinol oxidase subunit III, at 155,274 to 155,888
cyoC
NOLOHH_01310: cyoD - cytochrome o ubiquinol oxidase subunit III, at 155,888 to 156,217
cyoD
NOLOHH_01315: cyoE - heme o synthase, at 156,229 to 157,119
cyoE
Position (kb) 155
156
157 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 154.940 kb on + strand, within cyoB at 154.940 kb on + strand, within cyoB at 154.940 kb on + strand, within cyoB at 154.941 kb on - strand, within cyoB at 154.943 kb on - strand, within cyoB at 154.943 kb on - strand, within cyoB at 155.012 kb on + strand, within cyoB at 155.031 kb on - strand, within cyoB at 155.031 kb on - strand, within cyoB at 155.045 kb on - strand, within cyoB at 155.119 kb on + strand at 155.119 kb on + strand at 155.119 kb on + strand at 155.120 kb on - strand at 155.120 kb on - strand at 155.198 kb on + strand at 155.201 kb on + strand at 155.201 kb on + strand at 155.201 kb on + strand at 155.202 kb on - strand at 155.202 kb on - strand at 155.202 kb on - strand at 155.254 kb on + strand at 155.255 kb on - strand at 155.285 kb on + strand at 155.285 kb on + strand at 155.408 kb on + strand, within cyoC at 155.409 kb on - strand, within cyoC at 155.409 kb on - strand, within cyoC at 155.409 kb on - strand, within cyoC at 155.412 kb on + strand, within cyoC at 155.413 kb on - strand, within cyoC at 155.520 kb on + strand, within cyoC at 155.545 kb on - strand, within cyoC at 155.567 kb on + strand, within cyoC at 155.567 kb on + strand, within cyoC at 155.567 kb on + strand, within cyoC at 155.625 kb on + strand, within cyoC at 155.625 kb on + strand, within cyoC at 155.626 kb on - strand, within cyoC at 155.735 kb on + strand, within cyoC at 155.758 kb on + strand, within cyoC at 155.758 kb on + strand, within cyoC at 155.869 kb on - strand at 155.869 kb on - strand at 155.886 kb on + strand at 155.886 kb on + strand at 155.886 kb on + strand at 155.886 kb on + strand at 155.887 kb on - strand at 155.931 kb on + strand, within cyoD at 155.939 kb on + strand, within cyoD at 156.054 kb on + strand, within cyoD at 156.094 kb on + strand, within cyoD at 156.145 kb on - strand, within cyoD at 156.145 kb on - strand, within cyoD at 156.166 kb on - strand, within cyoD at 156.181 kb on + strand, within cyoD at 156.182 kb on - strand, within cyoD at 156.197 kb on + strand at 156.197 kb on + strand at 156.198 kb on - strand at 156.198 kb on - strand at 156.198 kb on - strand at 156.215 kb on + strand at 156.216 kb on - strand at 156.228 kb on + strand at 156.237 kb on + strand at 156.237 kb on + strand at 156.255 kb on - strand at 156.349 kb on + strand, within cyoE at 156.403 kb on + strand, within cyoE at 156.403 kb on + strand, within cyoE at 156.403 kb on + strand, within cyoE at 156.404 kb on - strand, within cyoE at 156.404 kb on - strand, within cyoE at 156.404 kb on - strand, within cyoE at 156.404 kb on - strand, within cyoE at 156.404 kb on - strand, within cyoE at 156.523 kb on - strand, within cyoE at 156.586 kb on + strand, within cyoE at 156.587 kb on - strand, within cyoE at 156.599 kb on - strand, within cyoE at 156.607 kb on + strand, within cyoE at 156.608 kb on - strand, within cyoE at 156.628 kb on + strand, within cyoE at 156.629 kb on - strand, within cyoE at 156.760 kb on + strand, within cyoE at 156.761 kb on - strand, within cyoE at 156.783 kb on + strand, within cyoE at 156.825 kb on - strand, within cyoE at 156.825 kb on - strand, within cyoE at 156.862 kb on + strand, within cyoE at 156.863 kb on - strand, within cyoE at 156.863 kb on - strand, within cyoE at 156.864 kb on + strand, within cyoE at 156.865 kb on - strand, within cyoE at 156.865 kb on - strand, within cyoE at 156.865 kb on - strand, within cyoE at 156.921 kb on + strand, within cyoE at 156.921 kb on + strand, within cyoE at 156.921 kb on + strand, within cyoE at 156.921 kb on + strand, within cyoE at 156.921 kb on + strand, within cyoE at 156.922 kb on - strand, within cyoE at 156.922 kb on - strand, within cyoE at 156.922 kb on - strand, within cyoE at 156.922 kb on - strand, within cyoE at 156.925 kb on + strand, within cyoE at 156.925 kb on + strand, within cyoE at 156.926 kb on - strand, within cyoE at 156.926 kb on - strand, within cyoE at 156.966 kb on + strand, within cyoE at 156.967 kb on - strand, within cyoE at 156.984 kb on + strand, within cyoE at 156.985 kb on - strand, within cyoE at 157.033 kb on - strand at 157.077 kb on + strand at 157.077 kb on + strand at 157.194 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 154,940 + cyoB NOLOHH_01300 0.83 -0.1 154,940 + cyoB NOLOHH_01300 0.83 -0.5 154,940 + cyoB NOLOHH_01300 0.83 +0.5 154,941 - cyoB NOLOHH_01300 0.83 +0.0 154,943 - cyoB NOLOHH_01300 0.83 +0.3 154,943 - cyoB NOLOHH_01300 0.83 -0.3 155,012 + cyoB NOLOHH_01300 0.86 -0.3 155,031 - cyoB NOLOHH_01300 0.87 -3.7 155,031 - cyoB NOLOHH_01300 0.87 -0.5 155,045 - cyoB NOLOHH_01300 0.88 -0.4 155,119 + -1.0 155,119 + -0.1 155,119 + +1.3 155,120 - +1.1 155,120 - +0.8 155,198 + +0.7 155,201 + -1.9 155,201 + +0.6 155,201 + -0.5 155,202 - +0.8 155,202 - +0.4 155,202 - +1.0 155,254 + -0.2 155,255 - -3.5 155,285 + -1.5 155,285 + +1.0 155,408 + cyoC NOLOHH_01305 0.22 -1.5 155,409 - cyoC NOLOHH_01305 0.22 -1.6 155,409 - cyoC NOLOHH_01305 0.22 +0.2 155,409 - cyoC NOLOHH_01305 0.22 -2.1 155,412 + cyoC NOLOHH_01305 0.22 -1.0 155,413 - cyoC NOLOHH_01305 0.23 +0.2 155,520 + cyoC NOLOHH_01305 0.40 -1.2 155,545 - cyoC NOLOHH_01305 0.44 +0.1 155,567 + cyoC NOLOHH_01305 0.48 -1.7 155,567 + cyoC NOLOHH_01305 0.48 -0.6 155,567 + cyoC NOLOHH_01305 0.48 -3.1 155,625 + cyoC NOLOHH_01305 0.57 -1.0 155,625 + cyoC NOLOHH_01305 0.57 -0.6 155,626 - cyoC NOLOHH_01305 0.57 -0.4 155,735 + cyoC NOLOHH_01305 0.75 +0.1 155,758 + cyoC NOLOHH_01305 0.79 +0.6 155,758 + cyoC NOLOHH_01305 0.79 -3.6 155,869 - +0.4 155,869 - -0.4 155,886 + -0.7 155,886 + +0.0 155,886 + -1.6 155,886 + -0.4 155,887 - -0.8 155,931 + cyoD NOLOHH_01310 0.13 +0.0 155,939 + cyoD NOLOHH_01310 0.15 +0.0 156,054 + cyoD NOLOHH_01310 0.50 +0.4 156,094 + cyoD NOLOHH_01310 0.62 -2.0 156,145 - cyoD NOLOHH_01310 0.78 +1.6 156,145 - cyoD NOLOHH_01310 0.78 -0.2 156,166 - cyoD NOLOHH_01310 0.84 -1.6 156,181 + cyoD NOLOHH_01310 0.89 +0.5 156,182 - cyoD NOLOHH_01310 0.89 +0.9 156,197 + +0.2 156,197 + -1.2 156,198 - -0.1 156,198 - +1.7 156,198 - +0.4 156,215 + +0.5 156,216 - -0.4 156,228 + -1.0 156,237 + -1.7 156,237 + -4.0 156,255 - -0.1 156,349 + cyoE NOLOHH_01315 0.13 -0.5 156,403 + cyoE NOLOHH_01315 0.20 -2.5 156,403 + cyoE NOLOHH_01315 0.20 -0.1 156,403 + cyoE NOLOHH_01315 0.20 -4.6 156,404 - cyoE NOLOHH_01315 0.20 -3.0 156,404 - cyoE NOLOHH_01315 0.20 -0.7 156,404 - cyoE NOLOHH_01315 0.20 -1.7 156,404 - cyoE NOLOHH_01315 0.20 -1.0 156,404 - cyoE NOLOHH_01315 0.20 +0.5 156,523 - cyoE NOLOHH_01315 0.33 -3.5 156,586 + cyoE NOLOHH_01315 0.40 -1.3 156,587 - cyoE NOLOHH_01315 0.40 -1.3 156,599 - cyoE NOLOHH_01315 0.42 +0.1 156,607 + cyoE NOLOHH_01315 0.42 -0.5 156,608 - cyoE NOLOHH_01315 0.43 +1.0 156,628 + cyoE NOLOHH_01315 0.45 +0.1 156,629 - cyoE NOLOHH_01315 0.45 -1.0 156,760 + cyoE NOLOHH_01315 0.60 -1.8 156,761 - cyoE NOLOHH_01315 0.60 -0.6 156,783 + cyoE NOLOHH_01315 0.62 -0.9 156,825 - cyoE NOLOHH_01315 0.67 +1.0 156,825 - cyoE NOLOHH_01315 0.67 -0.7 156,862 + cyoE NOLOHH_01315 0.71 +0.1 156,863 - cyoE NOLOHH_01315 0.71 -3.5 156,863 - cyoE NOLOHH_01315 0.71 -0.8 156,864 + cyoE NOLOHH_01315 0.71 -2.8 156,865 - cyoE NOLOHH_01315 0.71 +0.2 156,865 - cyoE NOLOHH_01315 0.71 -1.8 156,865 - cyoE NOLOHH_01315 0.71 +1.0 156,921 + cyoE NOLOHH_01315 0.78 -1.7 156,921 + cyoE NOLOHH_01315 0.78 -1.0 156,921 + cyoE NOLOHH_01315 0.78 -1.3 156,921 + cyoE NOLOHH_01315 0.78 -1.4 156,921 + cyoE NOLOHH_01315 0.78 -4.1 156,922 - cyoE NOLOHH_01315 0.78 -3.4 156,922 - cyoE NOLOHH_01315 0.78 -1.9 156,922 - cyoE NOLOHH_01315 0.78 +0.1 156,922 - cyoE NOLOHH_01315 0.78 +0.9 156,925 + cyoE NOLOHH_01315 0.78 -0.7 156,925 + cyoE NOLOHH_01315 0.78 -0.4 156,926 - cyoE NOLOHH_01315 0.78 -1.6 156,926 - cyoE NOLOHH_01315 0.78 +1.2 156,966 + cyoE NOLOHH_01315 0.83 +0.2 156,967 - cyoE NOLOHH_01315 0.83 -0.8 156,984 + cyoE NOLOHH_01315 0.85 -0.7 156,985 - cyoE NOLOHH_01315 0.85 +0.3 157,033 - -3.1 157,077 + +0.1 157,077 + -0.5 157,194 - -1.6
Or see this region's nucleotide sequence