Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00420 and NOLOHH_00425 are separated by 107 nucleotides NOLOHH_00425 and NOLOHH_00430 are separated by 420 nucleotides NOLOHH_00430 and NOLOHH_00435 are separated by 61 nucleotides NOLOHH_00435 and NOLOHH_00440 are separated by 36 nucleotides NOLOHH_00440 and NOLOHH_00445 are separated by 90 nucleotides
NOLOHH_00420: NOLOHH_00420 - hypothetical protein, at 27,957 to 28,409
_00420
NOLOHH_00425: NOLOHH_00425 - excisionase, at 28,517 to 28,894
_00425
NOLOHH_00430: NOLOHH_00430 - Putative integral membrane protein, at 29,315 to 29,530
_00430
NOLOHH_00435: NOLOHH_00435 - hypothetical protein, at 29,592 to 29,876
_00435
NOLOHH_00440: NOLOHH_00440 - hypothetical protein, at 29,913 to 30,215
_00440
NOLOHH_00445: NOLOHH_00445 - peptidyl-arginine deiminase, at 30,306 to 30,965
_00445
Position (kb) 29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 28.360 kb on + strand, within NOLOHH_00420 at 28.451 kb on - strand at 28.539 kb on + strand at 28.557 kb on + strand, within NOLOHH_00425 at 28.584 kb on + strand, within NOLOHH_00425 at 28.584 kb on + strand, within NOLOHH_00425 at 29.102 kb on - strand at 29.148 kb on + strand at 29.190 kb on + strand at 29.322 kb on - strand at 29.426 kb on + strand, within NOLOHH_00430 at 29.474 kb on - strand, within NOLOHH_00430 at 29.474 kb on - strand, within NOLOHH_00430 at 29.474 kb on - strand, within NOLOHH_00430 at 29.530 kb on + strand at 29.664 kb on + strand, within NOLOHH_00435 at 29.664 kb on + strand, within NOLOHH_00435 at 29.664 kb on + strand, within NOLOHH_00435 at 29.668 kb on + strand, within NOLOHH_00435 at 29.669 kb on - strand, within NOLOHH_00435 at 29.705 kb on - strand, within NOLOHH_00435 at 29.723 kb on - strand, within NOLOHH_00435 at 29.730 kb on + strand, within NOLOHH_00435 at 29.731 kb on - strand, within NOLOHH_00435 at 29.788 kb on - strand, within NOLOHH_00435 at 29.789 kb on + strand, within NOLOHH_00435 at 29.790 kb on - strand, within NOLOHH_00435 at 29.790 kb on - strand, within NOLOHH_00435 at 29.882 kb on + strand at 29.910 kb on - strand at 29.915 kb on - strand at 30.262 kb on - strand at 30.273 kb on - strand at 30.273 kb on - strand at 30.273 kb on - strand at 30.277 kb on - strand at 30.423 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 28,360 + NOLOHH_00420 0.89 -0.3 28,451 - -0.2 28,539 + +0.1 28,557 + NOLOHH_00425 0.11 -0.2 28,584 + NOLOHH_00425 0.18 +1.0 28,584 + NOLOHH_00425 0.18 +0.2 29,102 - -1.7 29,148 + -1.1 29,190 + +1.4 29,322 - +0.4 29,426 + NOLOHH_00430 0.51 +0.5 29,474 - NOLOHH_00430 0.74 -0.2 29,474 - NOLOHH_00430 0.74 -1.8 29,474 - NOLOHH_00430 0.74 +0.3 29,530 + -0.0 29,664 + NOLOHH_00435 0.25 -1.0 29,664 + NOLOHH_00435 0.25 -0.0 29,664 + NOLOHH_00435 0.25 +0.8 29,668 + NOLOHH_00435 0.27 -0.5 29,669 - NOLOHH_00435 0.27 +0.4 29,705 - NOLOHH_00435 0.40 -0.0 29,723 - NOLOHH_00435 0.46 +0.7 29,730 + NOLOHH_00435 0.48 -0.1 29,731 - NOLOHH_00435 0.49 +0.3 29,788 - NOLOHH_00435 0.69 +0.3 29,789 + NOLOHH_00435 0.69 +0.2 29,790 - NOLOHH_00435 0.69 -0.5 29,790 - NOLOHH_00435 0.69 +0.4 29,882 + -0.0 29,910 - -0.8 29,915 - +0.3 30,262 - -1.0 30,273 - +0.3 30,273 - -0.3 30,273 - +0.4 30,277 - +0.3 30,423 - NOLOHH_00445 0.18 -0.6 30,431 - NOLOHH_00445 0.19 +1.4 30,431 - NOLOHH_00445 0.19 -3.2 30,431 - NOLOHH_00445 0.19 +0.9 30,431 - NOLOHH_00445 0.19 -3.6 30,431 - NOLOHH_00445 0.19 -2.1
Or see this region's nucleotide sequence