Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00050

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00040 and NOLOHH_00045 are separated by 0 nucleotidesNOLOHH_00045 and NOLOHH_00050 are separated by 24 nucleotidesNOLOHH_00050 and mazF are separated by 8 nucleotidesmazF and NOLOHH_00060 overlap by 11 nucleotidesNOLOHH_00060 and NOLOHH_00065 are separated by 11 nucleotidesNOLOHH_00065 and NOLOHH_00070 are separated by 31 nucleotides NOLOHH_00040: NOLOHH_00040 - Mrr, at 3,072 to 3,797 _00040 NOLOHH_00045: NOLOHH_00045 - YmoA, at 3,798 to 4,199 _00045 NOLOHH_00050: NOLOHH_00050 - hypothetical protein, at 4,224 to 4,661 _00050 NOLOHH_00055: mazF - endoribonuclease MazF, at 4,670 to 4,996 mazF NOLOHH_00060: NOLOHH_00060 - hypothetical protein, at 4,986 to 5,243 _00060 NOLOHH_00065: NOLOHH_00065 - PbsX family transcriptional regulator, at 5,255 to 5,500 _00065 NOLOHH_00070: NOLOHH_00070 - hypothetical protein, at 5,532 to 5,738 _00070 Position (kb) 4 5Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3.260 kb on + strand, within NOLOHH_00040at 3.260 kb on + strand, within NOLOHH_00040at 3.261 kb on - strand, within NOLOHH_00040at 3.261 kb on - strand, within NOLOHH_00040at 3.261 kb on - strand, within NOLOHH_00040at 3.261 kb on - strand, within NOLOHH_00040at 3.261 kb on - strand, within NOLOHH_00040at 3.261 kb on - strand, within NOLOHH_00040at 3.261 kb on - strand, within NOLOHH_00040at 3.283 kb on + strand, within NOLOHH_00040at 3.284 kb on - strand, within NOLOHH_00040at 3.318 kb on + strand, within NOLOHH_00040at 3.331 kb on - strand, within NOLOHH_00040at 3.331 kb on - strand, within NOLOHH_00040at 3.331 kb on - strand, within NOLOHH_00040at 3.344 kb on - strand, within NOLOHH_00040at 3.371 kb on - strand, within NOLOHH_00040at 3.383 kb on + strand, within NOLOHH_00040at 3.384 kb on - strand, within NOLOHH_00040at 3.420 kb on + strand, within NOLOHH_00040at 3.421 kb on - strand, within NOLOHH_00040at 3.452 kb on - strand, within NOLOHH_00040at 3.452 kb on - strand, within NOLOHH_00040at 3.452 kb on - strand, within NOLOHH_00040at 3.452 kb on - strand, within NOLOHH_00040at 3.455 kb on - strand, within NOLOHH_00040at 3.472 kb on - strand, within NOLOHH_00040at 3.511 kb on + strand, within NOLOHH_00040at 3.511 kb on + strand, within NOLOHH_00040at 3.511 kb on + strand, within NOLOHH_00040at 3.511 kb on + strand, within NOLOHH_00040at 3.512 kb on - strand, within NOLOHH_00040at 3.534 kb on - strand, within NOLOHH_00040at 3.542 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.551 kb on + strand, within NOLOHH_00040at 3.552 kb on - strand, within NOLOHH_00040at 3.552 kb on - strand, within NOLOHH_00040at 3.552 kb on - strand, within NOLOHH_00040at 3.552 kb on - strand, within NOLOHH_00040at 3.552 kb on - strand, within NOLOHH_00040at 3.608 kb on + strand, within NOLOHH_00040at 3.770 kb on + strandat 3.770 kb on + strandat 3.779 kb on + strandat 3.795 kb on + strandat 3.795 kb on + strandat 3.809 kb on - strandat 3.812 kb on + strandat 3.812 kb on + strandat 3.813 kb on - strandat 3.813 kb on - strandat 3.813 kb on - strandat 3.814 kb on + strandat 3.814 kb on + strandat 3.814 kb on + strandat 3.814 kb on + strandat 3.814 kb on + strandat 3.814 kb on + strandat 3.848 kb on - strand, within NOLOHH_00045at 3.875 kb on + strand, within NOLOHH_00045at 3.929 kb on + strand, within NOLOHH_00045at 3.929 kb on + strand, within NOLOHH_00045at 4.011 kb on + strand, within NOLOHH_00045at 4.011 kb on + strand, within NOLOHH_00045at 4.012 kb on - strand, within NOLOHH_00045at 4.072 kb on + strand, within NOLOHH_00045at 4.073 kb on - strand, within NOLOHH_00045at 4.091 kb on + strand, within NOLOHH_00045at 4.148 kb on + strand, within NOLOHH_00045at 4.151 kb on + strand, within NOLOHH_00045at 4.524 kb on - strand, within NOLOHH_00050at 4.615 kb on - strand, within NOLOHH_00050at 4.639 kb on - strandat 4.664 kb on + strandat 4.668 kb on - strandat 4.672 kb on - strandat 4.730 kb on - strand, within mazFat 4.787 kb on + strand, within mazFat 4.847 kb on - strand, within mazFat 4.882 kb on - strand, within mazFat 5.016 kb on - strand, within NOLOHH_00060at 5.017 kb on + strand, within NOLOHH_00060at 5.030 kb on + strand, within NOLOHH_00060at 5.098 kb on - strand, within NOLOHH_00060at 5.190 kb on - strand, within NOLOHH_00060at 5.406 kb on - strand, within NOLOHH_00065at 5.505 kb on + strandat 5.530 kb on - strandat 5.530 kb on - strandat 5.530 kb on - strandat 5.551 kb on + strandat 5.552 kb on - strandat 5.621 kb on + strand, within NOLOHH_00070at 5.644 kb on + strand, within NOLOHH_00070at 5.645 kb on - strand, within NOLOHH_00070at 5.645 kb on - strand, within NOLOHH_00070at 5.645 kb on - strand, within NOLOHH_00070

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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3,260 + NOLOHH_00040 0.26 +0.5
3,260 + NOLOHH_00040 0.26 -0.6
3,261 - NOLOHH_00040 0.26 +0.1
3,261 - NOLOHH_00040 0.26 -0.4
3,261 - NOLOHH_00040 0.26 +1.4
3,261 - NOLOHH_00040 0.26 +1.0
3,261 - NOLOHH_00040 0.26 -0.4
3,261 - NOLOHH_00040 0.26 +0.3
3,261 - NOLOHH_00040 0.26 +0.8
3,283 + NOLOHH_00040 0.29 +1.9
3,284 - NOLOHH_00040 0.29 -0.3
3,318 + NOLOHH_00040 0.34 +1.0
3,331 - NOLOHH_00040 0.36 +0.6
3,331 - NOLOHH_00040 0.36 -0.4
3,331 - NOLOHH_00040 0.36 +0.7
3,344 - NOLOHH_00040 0.37 -1.6
3,371 - NOLOHH_00040 0.41 -0.1
3,383 + NOLOHH_00040 0.43 +0.4
3,384 - NOLOHH_00040 0.43 +0.0
3,420 + NOLOHH_00040 0.48 +0.3
3,421 - NOLOHH_00040 0.48 +0.2
3,452 - NOLOHH_00040 0.52 +0.5
3,452 - NOLOHH_00040 0.52 -1.1
3,452 - NOLOHH_00040 0.52 -1.4
3,452 - NOLOHH_00040 0.52 -0.4
3,455 - NOLOHH_00040 0.53 +0.8
3,472 - NOLOHH_00040 0.55 -1.0
3,511 + NOLOHH_00040 0.60 +0.6
3,511 + NOLOHH_00040 0.60 +0.2
3,511 + NOLOHH_00040 0.60 +0.5
3,511 + NOLOHH_00040 0.60 +1.2
3,512 - NOLOHH_00040 0.61 -0.4
3,534 - NOLOHH_00040 0.64 +0.0
3,542 + NOLOHH_00040 0.65 -0.2
3,551 + NOLOHH_00040 0.66 +0.7
3,551 + NOLOHH_00040 0.66 -0.2
3,551 + NOLOHH_00040 0.66 +1.0
3,551 + NOLOHH_00040 0.66 -0.9
3,551 + NOLOHH_00040 0.66 +0.0
3,551 + NOLOHH_00040 0.66 +0.6
3,551 + NOLOHH_00040 0.66 +1.7
3,551 + NOLOHH_00040 0.66 +0.0
3,551 + NOLOHH_00040 0.66 +0.7
3,551 + NOLOHH_00040 0.66 +0.1
3,552 - NOLOHH_00040 0.66 +0.1
3,552 - NOLOHH_00040 0.66 -3.7
3,552 - NOLOHH_00040 0.66 -3.5
3,552 - NOLOHH_00040 0.66 +0.2
3,552 - NOLOHH_00040 0.66 -0.4
3,608 + NOLOHH_00040 0.74 +0.1
3,770 + -0.1
3,770 + +1.4
3,779 + +0.7
3,795 + +0.8
3,795 + -2.0
3,809 - -0.5
3,812 + -0.9
3,812 + +0.4
3,813 - -0.7
3,813 - -0.2
3,813 - -0.4
3,814 + +0.8
3,814 + -0.4
3,814 + +1.5
3,814 + -1.8
3,814 + -0.0
3,814 + +1.5
3,848 - NOLOHH_00045 0.12 +0.2
3,875 + NOLOHH_00045 0.19 +0.7
3,929 + NOLOHH_00045 0.33 +0.2
3,929 + NOLOHH_00045 0.33 +0.6
4,011 + NOLOHH_00045 0.53 +0.4
4,011 + NOLOHH_00045 0.53 -0.0
4,012 - NOLOHH_00045 0.53 -0.4
4,072 + NOLOHH_00045 0.68 +0.4
4,073 - NOLOHH_00045 0.68 +0.4
4,091 + NOLOHH_00045 0.73 -0.3
4,148 + NOLOHH_00045 0.87 +0.3
4,151 + NOLOHH_00045 0.88 +0.2
4,524 - NOLOHH_00050 0.68 -4.0
4,615 - NOLOHH_00050 0.89 -1.4
4,639 - +0.3
4,664 + -0.2
4,668 - +0.7
4,672 - +0.2
4,730 - mazF NOLOHH_00055 0.18 +0.2
4,787 + mazF NOLOHH_00055 0.36 +0.2
4,847 - mazF NOLOHH_00055 0.54 -0.2
4,882 - mazF NOLOHH_00055 0.65 +1.3
5,016 - NOLOHH_00060 0.12 -0.9
5,017 + NOLOHH_00060 0.12 -0.0
5,030 + NOLOHH_00060 0.17 +0.3
5,098 - NOLOHH_00060 0.43 +0.3
5,190 - NOLOHH_00060 0.79 -0.8
5,406 - NOLOHH_00065 0.61 +1.4
5,505 + -3.9
5,530 - -0.4
5,530 - +0.2
5,530 - -0.8
5,551 + +0.3
5,552 - +0.5
5,621 + NOLOHH_00070 0.43 -1.2
5,644 + NOLOHH_00070 0.54 -0.8
5,645 - NOLOHH_00070 0.55 +0.5
5,645 - NOLOHH_00070 0.55 +0.1
5,645 - NOLOHH_00070 0.55 +1.0

Or see this region's nucleotide sequence