Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_28725 and OKFHMN_28730 are separated by 22 nucleotides OKFHMN_28730 and OKFHMN_28735 are separated by 72 nucleotides OKFHMN_28735 and hipB are separated by 263 nucleotides hipB and OKFHMN_28745 are separated by 76 nucleotides OKFHMN_28745 and OKFHMN_28750 overlap by 17 nucleotides OKFHMN_28750 and eCs1768 overlap by 29 nucleotides
OKFHMN_28725: OKFHMN_28725 - hypothetical protein, at 5,511,297 to 5,511,704
_28725
OKFHMN_28730: OKFHMN_28730 - Uncharacterized protein YdfC, at 5,511,727 to 5,511,945
_28730
OKFHMN_28735: OKFHMN_28735 - hypothetical protein, at 5,512,018 to 5,512,317
_28735
OKFHMN_28740: hipB - transcriptional regulator, at 5,512,581 to 5,512,988
hipB
OKFHMN_28745: OKFHMN_28745 - transcriptional regulator, at 5,513,065 to 5,513,292
_28745
OKFHMN_28750: OKFHMN_28750 - Putative bacterial toxin ydaT, at 5,513,276 to 5,513,827
_28750
OKFHMN_28755: eCs1768 - DNA-binding protein, at 5,513,799 to 5,514,839
eCs1768
Position (kb) 5512
5513 Strain fitness (log2 ratio) -1
0
1 at 5512.269 kb on + strand, within OKFHMN_28735 at 5512.305 kb on + strand at 5512.308 kb on - strand at 5512.583 kb on - strand at 5513.248 kb on - strand, within OKFHMN_28745 at 5513.971 kb on + strand, within eCs1768
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 5,512,269 + OKFHMN_28735 0.84 -1.6 5,512,305 + -1.1 5,512,308 - -0.0 5,512,583 - -0.4 5,513,248 - OKFHMN_28745 0.80 -0.8 5,513,971 + eCs1768 OKFHMN_28755 0.17 +0.3
Or see this region's nucleotide sequence