Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28135

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcotJC and yciE are separated by 18 nucleotidesyciE and yciE are separated by 36 nucleotidesyciE and OKFHMN_28145 are separated by 78 nucleotides OKFHMN_28130: cotJC - Mn-containing catalase, at 5,400,432 to 5,401,322 cotJC OKFHMN_28135: yciE - Protein YciE, at 5,401,341 to 5,401,847 yciE OKFHMN_28140: yciE - Protein YciF, at 5,401,884 to 5,402,384 yciE OKFHMN_28145: OKFHMN_28145 - stress-induced acidophilic repeat motif-containing protein, at 5,402,463 to 5,402,645 _28145 Position (kb) 5401 5402Strain fitness (log2 ratio) -1 0 1at 5400.648 kb on - strand, within cotJCat 5400.712 kb on - strand, within cotJCat 5400.914 kb on + strand, within cotJCat 5400.917 kb on + strand, within cotJCat 5400.926 kb on - strand, within cotJCat 5401.256 kb on + strandat 5401.672 kb on - strand, within yciEat 5401.672 kb on - strand, within yciEat 5402.059 kb on - strand, within yciEat 5402.345 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,400,648 - cotJC OKFHMN_28130 0.24 -0.4
5,400,712 - cotJC OKFHMN_28130 0.31 +0.7
5,400,914 + cotJC OKFHMN_28130 0.54 +0.1
5,400,917 + cotJC OKFHMN_28130 0.54 +0.3
5,400,926 - cotJC OKFHMN_28130 0.55 -1.2
5,401,256 + +0.6
5,401,672 - yciE OKFHMN_28135 0.65 +0.4
5,401,672 - yciE OKFHMN_28135 0.65 -0.0
5,402,059 - yciE OKFHMN_28140 0.35 +1.0
5,402,345 + +0.0

Or see this region's nucleotide sequence